STRINGSTRING
A0A2K1X2W8 A0A2K1X2W8 A0A2K1XCH0 A0A2K1XCH0 A0A2K1XUU2 A0A2K1XUU2 A0A2K1XYL7 A0A2K1XYL7 A0A2K2AJB1 A0A2K2AJB1 A0A2K2AS99 A0A2K2AS99 A0A2K2ASQ0 A0A2K2ASQ0 A0A2K2AZ15 A0A2K2AZ15 A0A2K2BLY4 A0A2K2BLY4 A0A2K2C413 A0A2K2C413 A0A3N7EBP2 A0A3N7EBP2 A0A3N7EXB4 A0A3N7EXB4 A0A3N7F4C1 A0A3N7F4C1 A0A3N7FCR9 A0A3N7FCR9 A0A3N7FY96 A0A3N7FY96 A0A3N7G491 A0A3N7G491 rpl20 rpl20 A9P8I1_POPTR A9P8I1_POPTR A9P8W6_POPTR A9P8W6_POPTR B9I0W5_POPTR B9I0W5_POPTR B9HZX2_POPTR B9HZX2_POPTR B9HPL2_POPTR B9HPL2_POPTR B9HNS3_POPTR B9HNS3_POPTR B9HHX3_POPTR B9HHX3_POPTR B9HHW6_POPTR B9HHW6_POPTR B9HHM2_POPTR B9HHM2_POPTR B9GFS1_POPTR B9GFS1_POPTR A9PH69_POPTR A9PH69_POPTR A9PGG5_POPTR A9PGG5_POPTR A9PFA8_POPTR A9PFA8_POPTR A9PF35_POPTR A9PF35_POPTR A9PEW5_POPTR A9PEW5_POPTR A9PAS4_POPTR A9PAS4_POPTR U5GCN5_POPTR U5GCN5_POPTR A9P9M3_POPTR A9P9M3_POPTR B9N1J9_POPTR B9N1J9_POPTR B9IF35_POPTR B9IF35_POPTR B9IAZ4_POPTR B9IAZ4_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A2K1X2W8Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5451 aa)
A0A2K1XCH0Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (151 aa)
A0A2K1XUU2Brix domain-containing protein. (332 aa)
A0A2K1XYL7Ribosomal_L18_c domain-containing protein. (298 aa)
A0A2K2AJB1Uncharacterized protein. (650 aa)
A0A2K2AS99Uncharacterized protein. (152 aa)
A0A2K2ASQ0Uncharacterized protein; Belongs to the universal ribosomal protein uL23 family. (77 aa)
A0A2K2AZ15Uncharacterized protein. (653 aa)
A0A2K2BLY4Brix domain-containing protein. (327 aa)
A0A2K2C413Uncharacterized protein. (207 aa)
A0A3N7EBP2Uncharacterized protein. (38 aa)
A0A3N7EXB4Uncharacterized protein. (113 aa)
A0A3N7F4C1Uncharacterized protein; Belongs to the universal ribosomal protein uL23 family. (70 aa)
A0A3N7FCR9Uncharacterized protein. (206 aa)
A0A3N7FY96Ribosomal_L16 domain-containing protein. (218 aa)
A0A3N7G491Uncharacterized protein. (112 aa)
rpl2050S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa)
A9P8I1_POPTRRibosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (153 aa)
A9P8W6_POPTRRibosomal_L16 domain-containing protein. (220 aa)
B9I0W5_POPTRRibosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
B9HZX2_POPTRBrix domain-containing protein. (317 aa)
B9HPL2_POPTRRibosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
B9HNS3_POPTRWD_REPEATS_REGION domain-containing protein. (471 aa)
B9HHX3_POPTRUncharacterized protein. (190 aa)
B9HHW6_POPTRUncharacterized protein. (371 aa)
B9HHM2_POPTR60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (322 aa)
B9GFS1_POPTRRibosomal_L6e_N domain-containing protein. (232 aa)
A9PH69_POPTRRibosomal_L18_c domain-containing protein. (297 aa)
A9PGG5_POPTRRibosomal_L16 domain-containing protein. (220 aa)
A9PFA8_POPTRRibosomal_L18_c domain-containing protein. (297 aa)
A9PF35_POPTR60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
A9PEW5_POPTRRibosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
A9PAS4_POPTRRibosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (153 aa)
U5GCN5_POPTR50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (126 aa)
A9P9M3_POPTRRibosomal_L6e_N domain-containing protein. (232 aa)
B9N1J9_POPTRBrix domain-containing protein. (317 aa)
B9IF35_POPTRBrix domain-containing protein. (314 aa)
B9IAZ4_POPTRRibosomal_L18_c domain-containing protein. (298 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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