19 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1YJI8	Uncharacterized protein. (347 aa)
	A0A2K1Z345	Uncharacterized protein. (690 aa)
	A0A2K1ZI20	Uncharacterized protein. (462 aa)
	A0A2K1ZSI1	Uncharacterized protein. (394 aa)
	A0A2K2APE4	Uncharacterized protein. (475 aa)
	A0A2K2C3R0	Uncharacterized protein. (691 aa)
	A0A2K2C5N1	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (280 aa)
	A0A2K2CBF7	Uncharacterized protein. (62 aa)
	A9PGH4_POPTR	Uncharacterized protein. (477 aa)
	B9GFI5_POPTR	Uncharacterized protein. (483 aa)
	B9H209_POPTR	Uncharacterized protein. (411 aa)
	B9H494_POPTR	Uncharacterized protein. (396 aa)
	B9H4V1_POPTR	Uncharacterized protein. (481 aa)
	B9HMZ8_POPTR	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (281 aa)
	B9HUQ5_POPTR	Uncharacterized protein. (462 aa)
	B9HYY6_POPTR	Uncharacterized protein. (466 aa)
	B9HZZ8_POPTR	Uncharacterized protein. (380 aa)
	B9I5X9_POPTR	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (208 aa)
	U5FI79_POPTR	Uncharacterized protein. (483 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1YJI8	A0A2K1ZI20	A0A2K1YJI8	A0A2K1ZI20	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A2K1YJI8	A0A2K2C5N1	A0A2K1YJI8	A0A2K2C5N1	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.663
A0A2K1YJI8	A9PGH4_POPTR	A0A2K1YJI8	A9PGH4	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A2K1YJI8	B9H4V1_POPTR	A0A2K1YJI8	B9H4V1	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A2K1YJI8	B9HMZ8_POPTR	A0A2K1YJI8	B9HMZ8	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.663
A0A2K1YJI8	B9HUQ5_POPTR	A0A2K1YJI8	B9HUQ5	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A2K1YJI8	B9I5X9_POPTR	A0A2K1YJI8	B9I5X9	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.663
A0A2K1Z345	A0A2K1ZI20	A0A2K1Z345	A0A2K1ZI20	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A2K1Z345	A0A2K1ZSI1	A0A2K1Z345	A0A2K1ZSI1	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A2K1Z345	A0A2K2C3R0	A0A2K1Z345	A0A2K2C3R0	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K1Z345	A0A2K2C5N1	A0A2K1Z345	A0A2K2C5N1	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.960
A0A2K1Z345	A9PGH4_POPTR	A0A2K1Z345	A9PGH4	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A2K1Z345	B9GFI5_POPTR	A0A2K1Z345	B9GFI5	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K1Z345	B9H209_POPTR	A0A2K1Z345	B9H209	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A2K1Z345	B9H494_POPTR	A0A2K1Z345	B9H494	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A2K1Z345	B9H4V1_POPTR	A0A2K1Z345	B9H4V1	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A2K1Z345	B9HMZ8_POPTR	A0A2K1Z345	B9HMZ8	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.960
A0A2K1Z345	B9HUQ5_POPTR	A0A2K1Z345	B9HUQ5	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A2K1Z345	B9I5X9_POPTR	A0A2K1Z345	B9I5X9	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.960
A0A2K1Z345	U5FI79_POPTR	A0A2K1Z345	U5FI79	Uncharacterized protein.	Uncharacterized protein.	0.900

page 1 of 10

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About