30 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1X307	Uncharacterized protein. (120 aa)
	A0A2K1XT79	Uncharacterized protein. (676 aa)
	A0A2K1YFN8	Plus3 domain-containing protein. (666 aa)
	A0A2K1ZRD5	CID domain-containing protein. (523 aa)
	A0A2K2A2B9	TPR_REGION domain-containing protein. (1089 aa)
	A0A2K2ADD1	CID domain-containing protein. (507 aa)
	A0A2K2ADE0	CID domain-containing protein. (525 aa)
	A0A2K2ANP6	CID domain-containing protein. (1034 aa)
	A0A2K2B1P0	Uncharacterized protein. (665 aa)
	A0A2K2BX58	TFIIS N-terminal domain-containing protein. (513 aa)
	A0A2K2C061	Uncharacterized protein. (676 aa)
	A0A2K2C763	CID domain-containing protein. (525 aa)
	A0A2K2C9V9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (88 aa)
	A0A3N7F2G8	Uncharacterized protein. (1084 aa)
	A0A3N7G1E5	TFIIS N-terminal domain-containing protein. (349 aa)
	A0A3N7HI58	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (125 aa)
	A0A3N7HSD4	C2H2-type domain-containing protein. (580 aa)
	A9P8R4_POPTR	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (88 aa)
	B9GR18_POPTR	Uncharacterized protein. (651 aa)
	B9GZK2_POPTR	TFIIS N-terminal domain-containing protein. (514 aa)
	B9H268_POPTR	Plus3 domain-containing protein. (662 aa)
	B9HGX3_POPTR	C2H2-type domain-containing protein. (486 aa)
	B9HK06_POPTR	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
	B9HUU3_POPTR	Uncharacterized protein. (405 aa)
	B9HUZ8_POPTR	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
	B9HZK7_POPTR	CID domain-containing protein. (1016 aa)
	B9I2V4_POPTR	Uncharacterized protein. (620 aa)
	B9MV13_POPTR	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (84 aa)
	B9NBP0_POPTR	CDC73_C domain-containing protein. (256 aa)
	U5FUJ7_POPTR	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (85 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1X307	A0A2K1ZRD5	A0A2K1X307	A0A2K1ZRD5	Uncharacterized protein.	CID domain-containing protein.	0.588
A0A2K1X307	A0A2K2A2B9	A0A2K1X307	A0A2K2A2B9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.418
A0A2K1X307	A0A2K2ADD1	A0A2K1X307	A0A2K2ADD1	Uncharacterized protein.	CID domain-containing protein.	0.588
A0A2K1X307	A0A2K2ADE0	A0A2K1X307	A0A2K2ADE0	Uncharacterized protein.	CID domain-containing protein.	0.588
A0A2K1X307	A0A2K2C763	A0A2K1X307	A0A2K2C763	Uncharacterized protein.	CID domain-containing protein.	0.588
A0A2K1XT79	A0A2K2A2B9	A0A2K1XT79	A0A2K2A2B9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.678
A0A2K1XT79	A0A2K2B1P0	A0A2K1XT79	A0A2K2B1P0	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A2K1XT79	A0A2K2C061	A0A2K1XT79	A0A2K2C061	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A2K1XT79	B9HUU3_POPTR	A0A2K1XT79	B9HUU3	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A2K1XT79	B9I2V4_POPTR	A0A2K1XT79	B9I2V4	Uncharacterized protein.	Uncharacterized protein.	0.736
A0A2K1XT79	B9NBP0_POPTR	A0A2K1XT79	B9NBP0	Uncharacterized protein.	CDC73_C domain-containing protein.	0.603
A0A2K1YFN8	A0A2K2A2B9	A0A2K1YFN8	A0A2K2A2B9	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.992
A0A2K1YFN8	A0A2K2B1P0	A0A2K1YFN8	A0A2K2B1P0	Plus3 domain-containing protein.	Uncharacterized protein.	0.987
A0A2K1YFN8	A0A2K2BX58	A0A2K1YFN8	A0A2K2BX58	Plus3 domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.809
A0A2K1YFN8	A0A2K2C061	A0A2K1YFN8	A0A2K2C061	Plus3 domain-containing protein.	Uncharacterized protein.	0.987
A0A2K1YFN8	A0A2K2C9V9	A0A2K1YFN8	A0A2K2C9V9	Plus3 domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.788
A0A2K1YFN8	A0A3N7G1E5	A0A2K1YFN8	A0A3N7G1E5	Plus3 domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.809
A0A2K1YFN8	A0A3N7HI58	A0A2K1YFN8	A0A3N7HI58	Plus3 domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.788
A0A2K1YFN8	A9P8R4_POPTR	A0A2K1YFN8	A9P8R4	Plus3 domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.788
A0A2K1YFN8	B9GZK2_POPTR	A0A2K1YFN8	B9GZK2	Plus3 domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.809

page 1 of 22

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About