52 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1YN75	Uncharacterized protein. (85 aa)
	A0A2K1WMY0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (49 aa)
	A0A2K1WMY6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (68 aa)
	A0A2K1X8K7	Ribosomal_L18e/L15P domain-containing protein. (273 aa)
	A0A2K1Y5M7	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	A0A2K1XRA7	Ribosomal_L16 domain-containing protein. (57 aa)
	A0A2K1Y4W0	L51_S25_CI-B8 domain-containing protein. (119 aa)
	U5G9F9_POPTR	Ribosomal_L2_C domain-containing protein. (215 aa)
	U5FT04_POPTR	Uncharacterized protein. (461 aa)
	U5FH70_POPTR	Ribosomal_L2_C domain-containing protein. (208 aa)
	A9PH95_POPTR	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (311 aa)
	B9ILF9_POPTR	Uncharacterized protein. (229 aa)
	POPTR_T033700	Uncharacterized protein. (205 aa)
	B9III1_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (278 aa)
	B9IE66_POPTR	MRP-S28 domain-containing protein. (416 aa)
	B9I6U1_POPTR	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (518 aa)
	B9I465_POPTR	Uncharacterized protein. (410 aa)
	B9I2D8_POPTR	Uncharacterized protein. (151 aa)
	B9I1N1_POPTR	Uncharacterized protein. (160 aa)
	B9I1E6_POPTR	Uncharacterized protein. (243 aa)
	B9HSH5_POPTR	Uncharacterized protein. (153 aa)
	B9HIA0_POPTR	Uncharacterized protein. (138 aa)
	B9HBZ9_POPTR	Uncharacterized protein. (151 aa)
	B9HAL7_POPTR	Uncharacterized protein. (92 aa)
	B9H700_POPTR	Uncharacterized protein. (92 aa)
	B9GRW6_POPTR	Uncharacterized protein. (144 aa)
	U5GAN9_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (66 aa)
	B9GJB3_POPTR	Uncharacterized protein. (131 aa)
	B9GFG1_POPTR	Ribosomal_L18e/L15P domain-containing protein. (269 aa)
	A9PG49_POPTR	Uncharacterized protein. (205 aa)
	A9PEY2_POPTR	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (266 aa)
	A9PDS5_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (131 aa)
	A0A2K1YN63	Uncharacterized protein. (110 aa)
	A9PDB0_POPTR	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (166 aa)
	POPTR_T173600	Uncharacterized protein. (128 aa)
	A9PBH0_POPTR	Uncharacterized protein. (142 aa)
	A9P9J1_POPTR	Uncharacterized protein. (136 aa)
	rps19-1	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (135 aa)
	rpl14	50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (122 aa)
	rps11	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	rps18	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	A0A3N7HDW8	Uncharacterized protein. (146 aa)
	A0A3N7G2E1	Uncharacterized protein. (340 aa)
	A0A3N7FU74	Uncharacterized protein. (131 aa)
	A0A3N7FPS1	Uncharacterized protein. (187 aa)
	A0A3N7F6R8	Ribosomal_S10 domain-containing protein. (189 aa)
	A0A2K2BJU8	Uncharacterized protein. (231 aa)
	A0A2K2AU09	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (63 aa)
	A0A2K2AD14	Uncharacterized protein. (177 aa)
	A0A2K1ZRP6	Uncharacterized protein. (75 aa)
	A0A2K1ZIM6	Uncharacterized protein. (104 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WMY0	A0A2K1WMY6	A0A2K1WMY0	A0A2K1WMY6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.540
A0A2K1WMY0	A0A2K1X8K7	A0A2K1WMY0	A0A2K1X8K7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L18e/L15P domain-containing protein.	0.704
A0A2K1WMY0	A0A2K1XRA7	A0A2K1WMY0	A0A2K1XRA7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L16 domain-containing protein.	0.785
A0A2K1WMY0	A0A2K1Y4W0	A0A2K1WMY0	A0A2K1Y4W0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	L51_S25_CI-B8 domain-containing protein.	0.900
A0A2K1WMY0	A0A2K1Y5M7	A0A2K1WMY0	A0A2K1Y5M7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.785
A0A2K1WMY0	A0A2K1YN63	A0A2K1WMY0	A0A2K1YN63	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.887
A0A2K1WMY0	A0A2K1YN75	A0A2K1WMY0	A0A2K1YN75	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.887
A0A2K1WMY0	A0A2K1ZIM6	A0A2K1WMY0	A0A2K1ZIM6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.778
A0A2K1WMY0	A0A2K1ZRP6	A0A2K1WMY0	A0A2K1ZRP6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.848
A0A2K1WMY0	A0A2K2AD14	A0A2K1WMY0	A0A2K2AD14	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.848
A0A2K1WMY0	A0A2K2AU09	A0A2K1WMY0	A0A2K2AU09	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.609
A0A2K1WMY0	A0A2K2BJU8	A0A2K1WMY0	A0A2K2BJU8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.930
A0A2K1WMY0	A0A3N7F6R8	A0A2K1WMY0	A0A3N7F6R8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S10 domain-containing protein.	0.553
A0A2K1WMY0	A0A3N7FPS1	A0A2K1WMY0	A0A3N7FPS1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.406
A0A2K1WMY0	A0A3N7FU74	A0A2K1WMY0	A0A3N7FU74	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.406
A0A2K1WMY0	A0A3N7G2E1	A0A2K1WMY0	A0A3N7G2E1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.554
A0A2K1WMY0	A0A3N7HDW8	A0A2K1WMY0	A0A3N7HDW8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.628
A0A2K1WMY0	A9P9J1_POPTR	A0A2K1WMY0	A9P9J1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.924
A0A2K1WMY0	A9PBH0_POPTR	A0A2K1WMY0	A9PBH0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.803
A0A2K1WMY0	A9PDB0_POPTR	A0A2K1WMY0	A9PDB0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.609

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