31 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1ZZN7	Uncharacterized protein. (701 aa)
	POPTR_T123800	SEO_C domain-containing protein. (112 aa)
	POPTR_T123500	SEO_C domain-containing protein. (394 aa)
	POPTR_T123900	Uncharacterized protein. (693 aa)
	POPTR_T123700	Uncharacterized protein. (709 aa)
	A0A2K1Y7J9	Uncharacterized protein. (116 aa)
	A0A2K1YJ46	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (575 aa)
	A0A2K1YP52	Uncharacterized protein. (684 aa)
	A0A2K1YP57	SEO_C domain-containing protein. (244 aa)
	A0A2K1YP62	SEO_C domain-containing protein. (249 aa)
	A0A2K1YP63	Uncharacterized protein. (706 aa)
	A0A2K1YP65	Uncharacterized protein. (673 aa)
	A0A2K1YP80	Uncharacterized protein. (708 aa)
	A0A2K1YVF7	Uncharacterized protein. (93 aa)
	A0A2K1YX11	LIM zinc-binding domain-containing protein. (505 aa)
	A0A2K1Z2J3	Uncharacterized protein. (542 aa)
	A0A2K2BWW8	Uncharacterized protein. (365 aa)
	A0A2K2C368	Uncharacterized protein. (573 aa)
	A0A3N7EQI2	Uncharacterized protein. (362 aa)
	B9GMT0_POPTR	Protein kinase domain-containing protein. (394 aa)
	B9GMZ2_POPTR	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (988 aa)
	B9GP63_POPTR	Protein kinase domain-containing protein. (731 aa)
	B9GYR6_POPTR	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (988 aa)
	B9GZ27_POPTR	Protein kinase domain-containing protein. (394 aa)
	B9HI67_POPTR	Uncharacterized protein. (123 aa)
	POPTR_T123600	Uncharacterized protein. (276 aa)
	B9I7L5_POPTR	Uncharacterized protein. (725 aa)
	B9IG52_POPTR	Uncharacterized protein. (689 aa)
	U5FP17_POPTR	Protein kinase domain-containing protein. (729 aa)
	U5FZH4_POPTR	Uncharacterized protein. (733 aa)
	U5G2V2_POPTR	Uncharacterized protein. (706 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1Y7J9	A0A2K1YVF7	A0A2K1Y7J9	A0A2K1YVF7	Uncharacterized protein.	Uncharacterized protein.	0.556
A0A2K1Y7J9	B9GMT0_POPTR	A0A2K1Y7J9	B9GMT0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.432
A0A2K1Y7J9	B9GZ27_POPTR	A0A2K1Y7J9	B9GZ27	Uncharacterized protein.	Protein kinase domain-containing protein.	0.432
A0A2K1Y7J9	B9HI67_POPTR	A0A2K1Y7J9	B9HI67	Uncharacterized protein.	Uncharacterized protein.	0.556
A0A2K1Y7J9	B9I7L5_POPTR	A0A2K1Y7J9	B9I7L5	Uncharacterized protein.	Uncharacterized protein.	0.559
A0A2K1YVF7	A0A2K1Y7J9	A0A2K1YVF7	A0A2K1Y7J9	Uncharacterized protein.	Uncharacterized protein.	0.556
A0A2K1YVF7	B9I7L5_POPTR	A0A2K1YVF7	B9I7L5	Uncharacterized protein.	Uncharacterized protein.	0.489
B9GMT0_POPTR	A0A2K1Y7J9	B9GMT0	A0A2K1Y7J9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.432
B9GMT0_POPTR	B9I7L5_POPTR	B9GMT0	B9I7L5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.821
B9GZ27_POPTR	A0A2K1Y7J9	B9GZ27	A0A2K1Y7J9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.432
B9GZ27_POPTR	B9I7L5_POPTR	B9GZ27	B9I7L5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.821
B9HI67_POPTR	A0A2K1Y7J9	B9HI67	A0A2K1Y7J9	Uncharacterized protein.	Uncharacterized protein.	0.556
B9HI67_POPTR	B9I7L5_POPTR	B9HI67	B9I7L5	Uncharacterized protein.	Uncharacterized protein.	0.489
B9I7L5_POPTR	A0A2K1Y7J9	B9I7L5	A0A2K1Y7J9	Uncharacterized protein.	Uncharacterized protein.	0.559
B9I7L5_POPTR	A0A2K1YVF7	B9I7L5	A0A2K1YVF7	Uncharacterized protein.	Uncharacterized protein.	0.489
B9I7L5_POPTR	B9GMT0_POPTR	B9I7L5	B9GMT0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.821
B9I7L5_POPTR	B9GZ27_POPTR	B9I7L5	B9GZ27	Uncharacterized protein.	Protein kinase domain-containing protein.	0.821
B9I7L5_POPTR	B9HI67_POPTR	B9I7L5	B9HI67	Uncharacterized protein.	Uncharacterized protein.	0.489

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