(23 nodes) Nucleobase transmembrane transporter activity network (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9GQJ8_POPTR	Uncharacterized protein. (138 aa)
	U5GLA8_POPTR	Uncharacterized protein. (550 aa)
	U5FU13_POPTR	Uncharacterized protein. (547 aa)
	B9N125_POPTR	Uncharacterized protein. (579 aa)
	B9MYJ5_POPTR	Uncharacterized protein. (707 aa)
	B9MTX4_POPTR	Uncharacterized protein. (392 aa)
	B9HQT7_POPTR	Uncharacterized protein. (706 aa)
	B9HIE2_POPTR	Uncharacterized protein. (404 aa)
	B9H6Y5_POPTR	Uncharacterized protein. (356 aa)
	B9GUY9_POPTR	Uncharacterized protein. (349 aa)
	B9GH85_POPTR	Uncharacterized protein. (385 aa)
	A0A3N7GFE3	Uncharacterized protein. (367 aa)
	A0A3N7FDL8	Uncharacterized protein. (420 aa)
	A0A3N7EPK5	Uncharacterized protein. (413 aa)
	A0A3N7EAC1	Uncharacterized protein. (362 aa)
	A0A2K2C8Q3	Uncharacterized protein. (379 aa)
	A0A2K2A0U5	Uncharacterized protein. (564 aa)
	A0A2K1YB90	Uncharacterized protein. (104 aa)
	A0A2K1XQD1	Uncharacterized protein. (370 aa)
	A0A2K1XKB1	Uncharacterized protein. (521 aa)
	A0A2K1XF53	Uncharacterized protein. (590 aa)
	A0A2K1X3E5	Uncharacterized protein. (259 aa)
	A0A2K1WZ58	Uncharacterized protein. (192 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WZ58	A0A2K2C8Q3	A0A2K1WZ58	A0A2K2C8Q3	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A2K1WZ58	B9GH85_POPTR	A0A2K1WZ58	B9GH85	Uncharacterized protein.	Uncharacterized protein.	0.447
A0A2K1XF53	A0A2K2A0U5	A0A2K1XF53	A0A2K2A0U5	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A2K1XF53	B9HQT7_POPTR	A0A2K1XF53	B9HQT7	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XF53	B9MYJ5_POPTR	A0A2K1XF53	B9MYJ5	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XF53	U5FU13_POPTR	A0A2K1XF53	U5FU13	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XF53	U5GLA8_POPTR	A0A2K1XF53	U5GLA8	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XKB1	A0A2K2A0U5	A0A2K1XKB1	A0A2K2A0U5	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K1XKB1	B9HQT7_POPTR	A0A2K1XKB1	B9HQT7	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XKB1	B9MYJ5_POPTR	A0A2K1XKB1	B9MYJ5	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1XKB1	U5FU13_POPTR	A0A2K1XKB1	U5FU13	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A2K1XKB1	U5GLA8_POPTR	A0A2K1XKB1	U5GLA8	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A2K1YB90	A0A2K2A0U5	A0A2K1YB90	A0A2K2A0U5	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K1YB90	B9HQT7_POPTR	A0A2K1YB90	B9HQT7	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1YB90	B9MYJ5_POPTR	A0A2K1YB90	B9MYJ5	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A2K1YB90	U5FU13_POPTR	A0A2K1YB90	U5FU13	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A2K1YB90	U5GLA8_POPTR	A0A2K1YB90	U5GLA8	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A2K2A0U5	A0A2K1XF53	A0A2K2A0U5	A0A2K1XF53	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A2K2A0U5	A0A2K1XKB1	A0A2K2A0U5	A0A2K1XKB1	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K2A0U5	A0A2K1YB90	A0A2K2A0U5	A0A2K1YB90	Uncharacterized protein.	Uncharacterized protein.	0.501

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