(14 nodes) RNA polymerase II general transcription initiation factor activity network (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	A0A2K1X3C3	Uncharacterized protein. (1902 aa)
	B9HR23_POPTR	Uncharacterized protein. (70 aa)
	B9IPN5_POPTR	Uncharacterized protein. (201 aa)
	B9N3L1_POPTR	Uncharacterized protein. (70 aa)
	U5FQN9_POPTR	TAF domain-containing protein. (536 aa)
	U5GBH4_POPTR	Uncharacterized protein. (96 aa)
	U5GK00_POPTR	TAFII55_N domain-containing protein. (200 aa)
	A0A2K1X961	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (538 aa)
	A0A2K1Y1Q0	Uncharacterized protein. (201 aa)
	A0A2K1ZSV3	Uncharacterized protein. (1895 aa)
	A0A2K1ZUX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (539 aa)
	A0A2K2BMK5	Uncharacterized protein. (78 aa)
	A0A2K2C972	TAF domain-containing protein. (547 aa)
	B9GLF9_POPTR	TAFII55_N domain-containing protein. (200 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1X3C3	A0A2K1X961	A0A2K1X3C3	A0A2K1X961	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.944
A0A2K1X3C3	A0A2K1Y1Q0	A0A2K1X3C3	A0A2K1Y1Q0	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2K1X3C3	A0A2K1ZSV3	A0A2K1X3C3	A0A2K1ZSV3	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K1X3C3	A0A2K1ZUX1	A0A2K1X3C3	A0A2K1ZUX1	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.944
A0A2K1X3C3	A0A2K2BMK5	A0A2K1X3C3	A0A2K2BMK5	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A2K1X3C3	A0A2K2C972	A0A2K1X3C3	A0A2K2C972	Uncharacterized protein.	TAF domain-containing protein.	0.986
A0A2K1X3C3	B9GLF9_POPTR	A0A2K1X3C3	B9GLF9	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.990
A0A2K1X3C3	B9IPN5_POPTR	A0A2K1X3C3	B9IPN5	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2K1X3C3	U5FQN9_POPTR	A0A2K1X3C3	U5FQN9	Uncharacterized protein.	TAF domain-containing protein.	0.986
A0A2K1X3C3	U5GBH4_POPTR	A0A2K1X3C3	U5GBH4	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2K1X3C3	U5GK00_POPTR	A0A2K1X3C3	U5GK00	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.990
A0A2K1X961	A0A2K1X3C3	A0A2K1X961	A0A2K1X3C3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.944
A0A2K1X961	A0A2K1Y1Q0	A0A2K1X961	A0A2K1Y1Q0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.958
A0A2K1X961	A0A2K1ZSV3	A0A2K1X961	A0A2K1ZSV3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.944
A0A2K1X961	A0A2K1ZUX1	A0A2K1X961	A0A2K1ZUX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.543
A0A2K1X961	A0A2K2BMK5	A0A2K1X961	A0A2K2BMK5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.845
A0A2K1X961	A0A2K2C972	A0A2K1X961	A0A2K2C972	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF domain-containing protein.	0.845
A0A2K1X961	B9GLF9_POPTR	A0A2K1X961	B9GLF9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFII55_N domain-containing protein.	0.884
A0A2K1X961	B9HR23_POPTR	A0A2K1X961	B9HR23	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.841
A0A2K1X961	B9IPN5_POPTR	A0A2K1X961	B9IPN5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.958

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