32 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1WR01	Protein kinase domain-containing protein. (644 aa)
	A0A2K1X5A3	Protein kinase domain-containing protein. (703 aa)
	A0A2K1X961	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (538 aa)
	A0A2K1X9V4	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1692 aa)
	A0A2K1XIT1	Protein kinase domain-containing protein. (685 aa)
	A0A2K1XYT2	Uncharacterized protein. (1111 aa)
	A0A2K1Y3P4	Protein kinase domain-containing protein. (476 aa)
	A0A2K1Y533	Protein kinase domain-containing protein. (726 aa)
	A0A2K1Y6U0	Protein kinase domain-containing protein. (516 aa)
	A0A2K1Y9Z2	Protein kinase domain-containing protein. (687 aa)
	A0A2K1YBS6	Protein kinase domain-containing protein. (592 aa)
	A0A2K1YJ00	Protein kinase domain-containing protein. (713 aa)
	A0A2K1ZKN8	Protein kinase domain-containing protein. (549 aa)
	A0A2K1ZUX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (539 aa)
	A0A2K1ZVN8	Protein kinase domain-containing protein. (517 aa)
	A0A2K1ZW32	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1644 aa)
	U5GCX0_POPTR	Uncharacterized protein. (1065 aa)
	U5GAR2_POPTR	Protein kinase domain-containing protein. (581 aa)
	B9NBP0_POPTR	CDC73_C domain-containing protein. (256 aa)
	B9N1G7_POPTR	Protein kinase domain-containing protein. (713 aa)
	B9IFI2_POPTR	Protein kinase domain-containing protein. (586 aa)
	B9I856_POPTR	Protein kinase domain-containing protein. (581 aa)
	B9I6M8_POPTR	Uncharacterized protein. (1082 aa)
	B9I2V4_POPTR	Uncharacterized protein. (620 aa)
	B9HUU3_POPTR	Uncharacterized protein. (405 aa)
	B9H3Z0_POPTR	PWWP domain-containing protein. (1010 aa)
	B9H0B0_POPTR	Uncharacterized protein. (261 aa)
	A0A3N7GC26	Rtt106 domain-containing protein. (400 aa)
	A0A3N7F2C1	Protein kinase domain-containing protein. (704 aa)
	A0A3N7F1R1	FACT-Spt16_Nlob domain-containing protein. (591 aa)
	A0A3N7ETX7	Protein kinase domain-containing protein. (705 aa)
	A0A2K2BRT4	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1626 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WR01	A0A2K1XYT2	A0A2K1WR01	A0A2K1XYT2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1WR01	A0A3N7F1R1	A0A2K1WR01	A0A3N7F1R1	Protein kinase domain-containing protein.	FACT-Spt16_Nlob domain-containing protein.	0.407
A0A2K1WR01	A0A3N7GC26	A0A2K1WR01	A0A3N7GC26	Protein kinase domain-containing protein.	Rtt106 domain-containing protein.	0.407
A0A2K1WR01	B9I6M8_POPTR	A0A2K1WR01	B9I6M8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1WR01	U5GCX0_POPTR	A0A2K1WR01	U5GCX0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1X5A3	A0A2K1XYT2	A0A2K1X5A3	A0A2K1XYT2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1X5A3	A0A3N7F1R1	A0A2K1X5A3	A0A3N7F1R1	Protein kinase domain-containing protein.	FACT-Spt16_Nlob domain-containing protein.	0.407
A0A2K1X5A3	A0A3N7GC26	A0A2K1X5A3	A0A3N7GC26	Protein kinase domain-containing protein.	Rtt106 domain-containing protein.	0.407
A0A2K1X5A3	B9I6M8_POPTR	A0A2K1X5A3	B9I6M8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1X5A3	U5GCX0_POPTR	A0A2K1X5A3	U5GCX0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1X961	A0A2K1XYT2	A0A2K1X961	A0A2K1XYT2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.638
A0A2K1X961	A0A2K1Y6U0	A0A2K1X961	A0A2K1Y6U0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Protein kinase domain-containing protein.	0.471
A0A2K1X961	A0A2K1ZUX1	A0A2K1X961	A0A2K1ZUX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.543
A0A2K1X961	A0A2K1ZVN8	A0A2K1X961	A0A2K1ZVN8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Protein kinase domain-containing protein.	0.471
A0A2K1X961	A0A3N7F1R1	A0A2K1X961	A0A3N7F1R1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	FACT-Spt16_Nlob domain-containing protein.	0.638
A0A2K1X961	A0A3N7GC26	A0A2K1X961	A0A3N7GC26	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Rtt106 domain-containing protein.	0.638
A0A2K1X961	B9I6M8_POPTR	A0A2K1X961	B9I6M8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.638
A0A2K1X961	U5GCX0_POPTR	A0A2K1X961	U5GCX0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.638
A0A2K1X9V4	A0A2K1XYT2	A0A2K1X9V4	A0A2K1XYT2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.955
A0A2K1X9V4	A0A2K1ZW32	A0A2K1X9V4	A0A2K1ZW32	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.544

page 1 of 17

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About