70 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3N7EGM1	RNA_pol_Rpb1_1 domain-containing protein. (174 aa)
	A0A2K2CE55	Uncharacterized protein. (952 aa)
	A0A2K2C6C0	Uncharacterized protein. (1006 aa)
	A0A2K2C1F0	Uncharacterized protein; Belongs to the argonaute family. (985 aa)
	A0A2K2AJW4	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (113 aa)
	A0A2K2ADW8	Uncharacterized protein. (773 aa)
	A0A2K2ABP0	Uncharacterized protein. (882 aa)
	A0A2K2A9R3	Uncharacterized protein. (630 aa)
	A0A2K2A8P8	Uncharacterized protein. (260 aa)
	A0A2K2A0S9	Uncharacterized protein; Belongs to the argonaute family. (926 aa)
	A0A2K1ZHV9	AAA domain-containing protein. (894 aa)
	A0A2K1ZDH2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1407 aa)
	A0A2K1Z0F1	Uncharacterized protein; Belongs to the argonaute family. (969 aa)
	A0A2K1YQS3	Uncharacterized protein; Belongs to the argonaute family. (996 aa)
	A0A2K1YL77	Uncharacterized protein. (951 aa)
	A0A2K1YAG7	Uncharacterized protein. (1624 aa)
	A0A2K1XYQ4	NYN domain-containing protein. (306 aa)
	A0A2K1XWM6	Uncharacterized protein. (910 aa)
	A0A2K1XHD6	Uncharacterized protein. (1185 aa)
	A0A2K1XH60	Uncharacterized protein; Belongs to the argonaute family. (875 aa)
	A0A2K1XEE2	Uncharacterized protein. (1357 aa)
	A0A2K1X495	Uncharacterized protein. (128 aa)
	A0A2K1WVY3	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1669 aa)
	A0A2K1WUG3	Piwi domain-containing protein. (206 aa)
	A0A2K1WUE8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1192 aa)
	A0A2K1WP41	DRBM domain-containing protein. (187 aa)
	A0A2K1WMK5	Uncharacterized protein. (998 aa)
	POPTR_T070800	Uncharacterized protein. (752 aa)
	POPTR_T070300	Uncharacterized protein. (287 aa)
	POPTR_T070600	Uncharacterized protein. (147 aa)
	B9IHG7_POPTR	Uncharacterized protein. (921 aa)
	B9I6L7_POPTR	NYN domain-containing protein. (725 aa)
	B9I4Y6_POPTR	Uncharacterized protein; Belongs to the argonaute family. (1062 aa)
	U5GUY7_POPTR	Uncharacterized protein. (911 aa)
	U5GUE6_POPTR	Cleavage and polyadenylation specificity factor subunit 2. (740 aa)
	U5GLQ5_POPTR	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1967 aa)
	B9N7E6_POPTR	Uncharacterized protein. (127 aa)
	B9N4Y8_POPTR	Uncharacterized protein. (531 aa)
	B9N3V2_POPTR	RPOL4c domain-containing protein. (197 aa)
	B9IKW9_POPTR	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1200 aa)
	B9I8S9_POPTR	F-box domain-containing protein. (424 aa)
	B9IEN4_POPTR	Uncharacterized protein. (1633 aa)
	B9IEN6_POPTR	Uncharacterized protein. (1642 aa)
	B9I370_POPTR	Uncharacterized protein. (1640 aa)
	B9IHG6_POPTR	Uncharacterized protein. (75 aa)
	B9I2L7_POPTR	Uncharacterized protein. (396 aa)
	B9I0H1_POPTR	Exonuclease domain-containing protein. (339 aa)
	B9HY36_POPTR	Uncharacterized protein. (1284 aa)
	B9HXP0_POPTR	Uncharacterized protein; Belongs to the argonaute family. (1030 aa)
	B9HS18_POPTR	Uncharacterized protein. (531 aa)
	B9HKB5_POPTR	Uncharacterized protein; Belongs to the argonaute family. (996 aa)
	B9HK80_POPTR	Uncharacterized protein. (913 aa)
	B9HDH5_POPTR	Uncharacterized protein. (930 aa)
	B9HA49_POPTR	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1198 aa)
	B9GQF5_POPTR	F-box domain-containing protein. (405 aa)
	A9PA33_POPTR	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
	A0A3N7GQC9	NYN domain-containing protein. (689 aa)
	POPTR_T070700	DRBM domain-containing protein. (156 aa)
	A0A3N7G882	Uncharacterized protein. (841 aa)
	A0A3N7G4I8	PAZ domain-containing protein. (588 aa)
	A0A3N7G151	Piwi domain-containing protein. (381 aa)
	A0A3N7FWZ8	RNA_pol_Rpb1_1 domain-containing protein. (123 aa)
	A0A3N7FVK7	Uncharacterized protein. (525 aa)
	A0A3N7FUW5	NYN domain-containing protein. (461 aa)
	A0A3N7FU59	Uncharacterized protein; Belongs to the argonaute family. (1170 aa)
	A0A3N7FMX5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1409 aa)
	A0A3N7FD15	Cleavage and polyadenylation specificity factor subunit 2. (302 aa)
	POPTR_T122601	Uncharacterized protein. (527 aa)
	A0A3N7F5J1	Uncharacterized protein. (68 aa)
	A0A3N7EKA9	Cleavage and polyadenylation specificity factor subunit 2. (377 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WMK5	A0A2K2AJW4	A0A2K1WMK5	A0A2K2AJW4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.590
A0A2K1WMK5	A9PA33_POPTR	A0A2K1WMK5	A9PA33	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.590
A0A2K1WP41	U5GLQ5_POPTR	A0A2K1WP41	U5GLQ5	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.424
A0A2K1WUE8	A0A2K1WVY3	A0A2K1WUE8	A0A2K1WVY3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.485
A0A2K1WUE8	A0A2K1XWM6	A0A2K1WUE8	A0A2K1XWM6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.576
A0A2K1WUE8	A0A2K2A8P8	A0A2K1WUE8	A0A2K2A8P8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.554
A0A2K1WUE8	A0A3N7EGM1	A0A2K1WUE8	A0A3N7EGM1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_Rpb1_1 domain-containing protein.	0.872
A0A2K1WUE8	A0A3N7F5J1	A0A2K1WUE8	A0A3N7F5J1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.485
A0A2K1WUE8	A0A3N7FWZ8	A0A2K1WUE8	A0A3N7FWZ8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_Rpb1_1 domain-containing protein.	0.961
A0A2K1WUE8	B9HA49_POPTR	A0A2K1WUE8	B9HA49	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.538
A0A2K1WUE8	B9IKW9_POPTR	A0A2K1WUE8	B9IKW9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.538
A0A2K1WUE8	B9N3V2_POPTR	A0A2K1WUE8	B9N3V2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.776
A0A2K1WUE8	U5GLQ5_POPTR	A0A2K1WUE8	U5GLQ5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.428
A0A2K1WUG3	A0A2K1WVY3	A0A2K1WUG3	A0A2K1WVY3	Piwi domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.762
A0A2K1WUG3	A0A2K1YL77	A0A2K1WUG3	A0A2K1YL77	Piwi domain-containing protein.	Uncharacterized protein.	0.499
A0A2K1WUG3	A0A2K1ZDH2	A0A2K1WUG3	A0A2K1ZDH2	Piwi domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.768
A0A2K1WUG3	A0A2K2CE55	A0A2K1WUG3	A0A2K2CE55	Piwi domain-containing protein.	Uncharacterized protein.	0.499
A0A2K1WUG3	A0A3N7EGM1	A0A2K1WUG3	A0A3N7EGM1	Piwi domain-containing protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.764
A0A2K1WUG3	A0A3N7F5J1	A0A2K1WUG3	A0A3N7F5J1	Piwi domain-containing protein.	Uncharacterized protein.	0.762
A0A2K1WUG3	A0A3N7FMX5	A0A2K1WUG3	A0A3N7FMX5	Piwi domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.768

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