65 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9GF87_POPTR	NAC domain-containing protein. (186 aa)
	A9PFA4_POPTR	zf-LSD1 domain-containing protein. (366 aa)
	A9PBV5_POPTR	Uncharacterized protein. (111 aa)
	A9PAB8_POPTR	4F5 domain-containing protein. (68 aa)
	A9P9Z3_POPTR	LITAF domain-containing protein. (134 aa)
	A0A3N7H917	RRM domain-containing protein. (310 aa)
	A0A3N7GPL4	zf-LSD1 domain-containing protein. (437 aa)
	A0A3N7G6D3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (148 aa)
	A0A3N7G3M1	Uncharacterized protein. (140 aa)
	A0A3N7G173	Uncharacterized protein. (243 aa)
	A0A2K1X9E3	Uncharacterized protein. (905 aa)
	A0A2K1XQI9	VASt domain-containing protein. (645 aa)
	A0A2K1YC57	zf-LSD1 domain-containing protein. (359 aa)
	A0A2K1YC60	zf-LSD1 domain-containing protein. (338 aa)
	A0A2K1YC72	zf-LSD1 domain-containing protein. (439 aa)
	A0A2K1YGA0	Uncharacterized protein. (494 aa)
	A0A2K1YK81	RING-type domain-containing protein. (340 aa)
	A0A2K1YZ41	DEAD domain-containing protein. (555 aa)
	A0A2K1ZAM0	Uncharacterized protein. (240 aa)
	A0A2K1ZNC0	Uncharacterized protein. (467 aa)
	A0A2K1ZP47	Uncharacterized protein. (322 aa)
	A0A2K1ZP54	Uncharacterized protein. (323 aa)
	A0A2K1ZTV4	Uncharacterized protein. (408 aa)
	A0A2K2ACF6	NAC domain-containing protein. (195 aa)
	A0A2K2AFU2	Uncharacterized protein. (465 aa)
	A0A2K2AIJ1	Uncharacterized protein. (2260 aa)
	A0A2K2B1U8	TMF_TATA_bd domain-containing protein. (975 aa)
	A0A2K2B561	Uncharacterized protein. (581 aa)
	A0A2K2BC95	E2F_TDP domain-containing protein. (430 aa)
	A0A2K2BF91	Uncharacterized protein. (2259 aa)
	A0A2K2BJX7	BAG domain-containing protein. (908 aa)
	A0A2K2BLF5	Uncharacterized protein. (807 aa)
	A0A2K2BWN7	Uncharacterized protein. (587 aa)
	A0A2K2BXH5	Uncharacterized protein. (157 aa)
	A0A2K2CCY6	RING-type domain-containing protein. (282 aa)
	A0A3N7E9H6	RRM domain-containing protein. (280 aa)
	A0A3N7EKU4	Uncharacterized protein. (563 aa)
	A0A3N7EQ35	Uncharacterized protein. (244 aa)
	A0A3N7ERP7	VASt domain-containing protein. (438 aa)
	A0A3N7FCB5	TMF_TATA_bd domain-containing protein. (982 aa)
	A0A3N7FHM2	Uncharacterized protein. (254 aa)
	A0A3N7FUA2	zf-LSD1 domain-containing protein. (372 aa)
	POPTR_T164600	Uncharacterized protein; Belongs to the DEAD box helicase family. (800 aa)
	A0A2K1WZN1	Uncharacterized protein. (92 aa)
	U5GSX2_POPTR	Uncharacterized protein; Belongs to the BI1 family. (247 aa)
	U5GRY0_POPTR	4F5 domain-containing protein. (69 aa)
	U5GL78_POPTR	F-box domain-containing protein. (330 aa)
	U5GIX2_POPTR	RRM domain-containing protein. (277 aa)
	U5GIW9_POPTR	LSD family protein. (155 aa)
	U5GI70_POPTR	DUF1716 domain-containing protein. (545 aa)
	U5GHE8_POPTR	DAGKc domain-containing protein. (627 aa)
	U5GEF2_POPTR	Uncharacterized protein. (561 aa)
	B9NAA8_POPTR	RING-type domain-containing protein. (337 aa)
	B9NA56_POPTR	RING-type domain-containing protein. (334 aa)
	B9ICK4_POPTR	RING-type domain-containing protein. (326 aa)
	B9HX26_POPTR	Uncharacterized protein. (111 aa)
	B9HES9_POPTR	NAC domain-containing protein. (196 aa)
	B9HDE5_POPTR	Uncharacterized protein. (899 aa)
	B9HDD6_POPTR	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (327 aa)
	B9H880_POPTR	G domain-containing protein. (926 aa)
	B9GZS1_POPTR	NAC domain-containing protein. (192 aa)
	B9GYP7_POPTR	Uncharacterized protein; Belongs to the BI1 family. (247 aa)
	B9GQK9_POPTR	AvrRpt-cleavage domain-containing protein. (264 aa)
	B9GN29_POPTR	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (458 aa)
	B9GMQ9_POPTR	LITAF domain-containing protein. (134 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1X9E3	B9HDE5_POPTR	A0A2K1X9E3	B9HDE5	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A2K1X9E3	U5GI70_POPTR	A0A2K1X9E3	U5GI70	Uncharacterized protein.	DUF1716 domain-containing protein.	0.498
A0A2K1ZP47	A0A2K1ZP54	A0A2K1ZP47	A0A2K1ZP54	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A2K1ZP54	A0A2K1ZP47	A0A2K1ZP54	A0A2K1ZP47	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A2K2B561	A0A2K2BWN7	A0A2K2B561	A0A2K2BWN7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K2BWN7	A0A2K2B561	A0A2K2BWN7	A0A2K2B561	Uncharacterized protein.	Uncharacterized protein.	0.900
B9HDE5_POPTR	A0A2K1X9E3	B9HDE5	A0A2K1X9E3	Uncharacterized protein.	Uncharacterized protein.	0.960
B9HDE5_POPTR	U5GI70_POPTR	B9HDE5	U5GI70	Uncharacterized protein.	DUF1716 domain-containing protein.	0.498
U5GI70_POPTR	A0A2K1X9E3	U5GI70	A0A2K1X9E3	DUF1716 domain-containing protein.	Uncharacterized protein.	0.498
U5GI70_POPTR	B9HDE5_POPTR	U5GI70	B9HDE5	DUF1716 domain-containing protein.	Uncharacterized protein.	0.498

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