11 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3N7FG90	Uncharacterized protein. (147 aa)
	B9MXN0_POPTR	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (192 aa)
	B9MWW4_POPTR	Uncharacterized protein. (66 aa)
	B9HXX8_POPTR	Uncharacterized protein. (103 aa)
	B9HI96_POPTR	CULLIN_2 domain-containing protein; Belongs to the cullin family. (870 aa)
	B9HF19_POPTR	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (192 aa)
	B9H2H1_POPTR	Uncharacterized protein. (63 aa)
	A9P9X2_POPTR	Uncharacterized protein. (63 aa)
	A0A3N7FFW3	APC1_C domain-containing protein. (1833 aa)
	A0A2K2ARJ4	ANAPC5 domain-containing protein. (925 aa)
	A0A2K2APC8	WD_REPEATS_REGION domain-containing protein. (771 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K2APC8	A0A2K2ARJ4	A0A2K2APC8	A0A2K2ARJ4	WD_REPEATS_REGION domain-containing protein.	ANAPC5 domain-containing protein.	0.993
A0A2K2APC8	A0A3N7FFW3	A0A2K2APC8	A0A3N7FFW3	WD_REPEATS_REGION domain-containing protein.	APC1_C domain-containing protein.	0.996
A0A2K2APC8	A0A3N7FG90	A0A2K2APC8	A0A3N7FG90	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
A0A2K2APC8	A9P9X2_POPTR	A0A2K2APC8	A9P9X2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.766
A0A2K2APC8	B9H2H1_POPTR	A0A2K2APC8	B9H2H1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.766
A0A2K2APC8	B9HF19_POPTR	A0A2K2APC8	B9HF19	WD_REPEATS_REGION domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.992
A0A2K2APC8	B9HI96_POPTR	A0A2K2APC8	B9HI96	WD_REPEATS_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.992
A0A2K2APC8	B9HXX8_POPTR	A0A2K2APC8	B9HXX8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
A0A2K2APC8	B9MWW4_POPTR	A0A2K2APC8	B9MWW4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.990
A0A2K2APC8	B9MXN0_POPTR	A0A2K2APC8	B9MXN0	WD_REPEATS_REGION domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.992
A0A2K2ARJ4	A0A2K2APC8	A0A2K2ARJ4	A0A2K2APC8	ANAPC5 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
A0A2K2ARJ4	A0A3N7FFW3	A0A2K2ARJ4	A0A3N7FFW3	ANAPC5 domain-containing protein.	APC1_C domain-containing protein.	0.993
A0A2K2ARJ4	A0A3N7FG90	A0A2K2ARJ4	A0A3N7FG90	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.973
A0A2K2ARJ4	A9P9X2_POPTR	A0A2K2ARJ4	A9P9X2	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.640
A0A2K2ARJ4	B9H2H1_POPTR	A0A2K2ARJ4	B9H2H1	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.640
A0A2K2ARJ4	B9HF19_POPTR	A0A2K2ARJ4	B9HF19	ANAPC5 domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.992
A0A2K2ARJ4	B9HI96_POPTR	A0A2K2ARJ4	B9HI96	ANAPC5 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.987
A0A2K2ARJ4	B9HXX8_POPTR	A0A2K2ARJ4	B9HXX8	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.973
A0A2K2ARJ4	B9MXN0_POPTR	A0A2K2ARJ4	B9MXN0	ANAPC5 domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.992
A0A3N7FFW3	A0A2K2APC8	A0A3N7FFW3	A0A2K2APC8	APC1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About