31 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3N7HWA5	Uncharacterized protein. (144 aa)
	A0A2K1XR04	Uncharacterized protein. (613 aa)
	A0A2K1Z3M3	Uncharacterized protein. (551 aa)
	A0A2K1Z894	Uncharacterized protein. (247 aa)
	A0A2K1Z8A5	Uncharacterized protein. (595 aa)
	A0A2K2ACQ5	Uncharacterized protein. (611 aa)
	A0A2K1WVP2	Uncharacterized protein. (257 aa)
	POPTR_T074400	Uncharacterized protein. (502 aa)
	POPTR_T167700	Uncharacterized protein. (627 aa)
	A0A2K2C457	Uncharacterized protein. (551 aa)
	A0A3N7ECB6	Uncharacterized protein. (545 aa)
	A0A3N7ERY4	Uncharacterized protein. (485 aa)
	A0A3N7F506	Uncharacterized protein. (211 aa)
	A0A3N7F5X1	Uncharacterized protein. (406 aa)
	A0A3N7FJR0	Uncharacterized protein. (430 aa)
	A0A3N7G654	Uncharacterized protein. (469 aa)
	A0A3N7G8I0	Uncharacterized protein. (599 aa)
	A0A3N7GGF7	Uncharacterized protein. (201 aa)
	A0A2K1WVR0	Uncharacterized protein. (262 aa)
	A9PFV7_POPTR	Uncharacterized protein. (545 aa)
	B9H8Z1_POPTR	Uncharacterized protein. (557 aa)
	B9H8Z8_POPTR	Uncharacterized protein. (409 aa)
	B9HQJ0_POPTR	Uncharacterized protein. (581 aa)
	B9I1W0_POPTR	Uncharacterized protein. (592 aa)
	B9IQS5_POPTR	Uncharacterized protein. (612 aa)
	B9N649_POPTR	Uncharacterized protein. (599 aa)
	U5FVX1_POPTR	Uncharacterized protein. (597 aa)
	U5GJH9_POPTR	Uncharacterized protein. (331 aa)
	A0A2K1WVQ5	Uncharacterized protein. (557 aa)
	A0A2K1WVQ4	Uncharacterized protein. (607 aa)
	A0A2K1WVP5	Uncharacterized protein. (607 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WVP5	A0A2K1Z894	A0A2K1WVP5	A0A2K1Z894	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A2K1WVP5	U5GJH9_POPTR	A0A2K1WVP5	U5GJH9	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A2K1WVQ5	A0A2K1XR04	A0A2K1WVQ5	A0A2K1XR04	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A2K1WVQ5	B9H8Z1_POPTR	A0A2K1WVQ5	B9H8Z1	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A2K1WVR0	A0A2K1Z894	A0A2K1WVR0	A0A2K1Z894	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A2K1XR04	A0A2K1WVQ5	A0A2K1XR04	A0A2K1WVQ5	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A2K1XR04	B9H8Z1_POPTR	A0A2K1XR04	B9H8Z1	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A2K1Z894	A0A2K1WVP5	A0A2K1Z894	A0A2K1WVP5	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A2K1Z894	A0A2K1WVR0	A0A2K1Z894	A0A2K1WVR0	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A2K1Z894	A0A3N7F5X1	A0A2K1Z894	A0A3N7F5X1	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A2K1Z894	A0A3N7G654	A0A2K1Z894	A0A3N7G654	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A2K1Z894	A0A3N7GGF7	A0A2K1Z894	A0A3N7GGF7	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A2K1Z894	A0A3N7HWA5	A0A2K1Z894	A0A3N7HWA5	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A2K1Z894	B9H8Z8_POPTR	A0A2K1Z894	B9H8Z8	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A3N7ERY4	A0A3N7HWA5	A0A3N7ERY4	A0A3N7HWA5	Uncharacterized protein.	Uncharacterized protein.	0.514
A0A3N7F5X1	A0A2K1Z894	A0A3N7F5X1	A0A2K1Z894	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A3N7F5X1	U5GJH9_POPTR	A0A3N7F5X1	U5GJH9	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A3N7G654	A0A2K1Z894	A0A3N7G654	A0A2K1Z894	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A3N7G8I0	U5GJH9_POPTR	A0A3N7G8I0	U5GJH9	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A3N7GGF7	A0A2K1Z894	A0A3N7GGF7	A0A2K1Z894	Uncharacterized protein.	Uncharacterized protein.	0.493

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