31 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POPTR_T070600	Uncharacterized protein. (147 aa)
	POPTR_T070300	Uncharacterized protein. (287 aa)
	POPTR_T070800	Uncharacterized protein. (752 aa)
	A0A2K1WP41	DRBM domain-containing protein. (187 aa)
	A0A2K1XE81	Uncharacterized protein. (765 aa)
	A0A2K1XHT6	Uncharacterized protein. (1202 aa)
	A0A2K1Y0C9	Uncharacterized protein. (577 aa)
	A0A2K1YHE9	Uncharacterized protein. (341 aa)
	A0A2K1YL77	Uncharacterized protein. (951 aa)
	A0A2K1YZQ8	Uncharacterized protein. (1155 aa)
	A0A2K1Z8A6	Uncharacterized protein. (490 aa)
	A0A2K1ZDH2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1407 aa)
	A0A2K2ARZ2	DRBM domain-containing protein. (151 aa)
	A0A2K2B8X2	DRBM domain-containing protein. (169 aa)
	A0A2K2BHA4	Uncharacterized protein. (285 aa)
	A0A2K2C774	Uncharacterized protein. (477 aa)
	A0A2K2CE55	Uncharacterized protein. (952 aa)
	A0A3N7FLP8	Uncharacterized protein. (1210 aa)
	A0A3N7FMX5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1409 aa)
	A0A3N7FVK7	Uncharacterized protein. (525 aa)
	A0A3N7G625	Uncharacterized protein. (453 aa)
	A0A3N7G882	Uncharacterized protein. (841 aa)
	POPTR_T070700	DRBM domain-containing protein. (156 aa)
	B9H271_POPTR	Uncharacterized protein. (996 aa)
	B9H6U2_POPTR	Uncharacterized protein. (355 aa)
	B9HAP9_POPTR	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1638 aa)
	B9HKJ5_POPTR	Uncharacterized protein. (1154 aa)
	U5FM35_POPTR	Uncharacterized protein. (487 aa)
	U5G0W4_POPTR	Uncharacterized protein. (990 aa)
	U5GAH0_POPTR	Uncharacterized protein. (576 aa)
	U5GLQ5_POPTR	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1967 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WP41	B9HAP9_POPTR	A0A2K1WP41	B9HAP9	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.623
A0A2K1WP41	U5GLQ5_POPTR	A0A2K1WP41	U5GLQ5	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.424
A0A2K1YL77	A0A2K1ZDH2	A0A2K1YL77	A0A2K1ZDH2	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.512
A0A2K1YL77	A0A3N7FMX5	A0A2K1YL77	A0A3N7FMX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.512
A0A2K1YL77	B9HAP9_POPTR	A0A2K1YL77	B9HAP9	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.540
A0A2K1YL77	U5GLQ5_POPTR	A0A2K1YL77	U5GLQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.582
A0A2K1ZDH2	A0A2K1YL77	A0A2K1ZDH2	A0A2K1YL77	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.512
A0A2K1ZDH2	A0A2K2CE55	A0A2K1ZDH2	A0A2K2CE55	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.512
A0A2K2ARZ2	U5GLQ5_POPTR	A0A2K2ARZ2	U5GLQ5	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.452
A0A2K2BHA4	U5GLQ5_POPTR	A0A2K2BHA4	U5GLQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.452
A0A2K2CE55	A0A2K1ZDH2	A0A2K2CE55	A0A2K1ZDH2	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.512
A0A2K2CE55	A0A3N7FMX5	A0A2K2CE55	A0A3N7FMX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.512
A0A2K2CE55	B9HAP9_POPTR	A0A2K2CE55	B9HAP9	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.540
A0A2K2CE55	U5GLQ5_POPTR	A0A2K2CE55	U5GLQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.582
A0A3N7FMX5	A0A2K1YL77	A0A3N7FMX5	A0A2K1YL77	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.512
A0A3N7FMX5	A0A2K2CE55	A0A3N7FMX5	A0A2K2CE55	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.512
A0A3N7FVK7	B9HAP9_POPTR	A0A3N7FVK7	B9HAP9	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.623
A0A3N7FVK7	U5GLQ5_POPTR	A0A3N7FVK7	U5GLQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.424
A0A3N7G625	U5GLQ5_POPTR	A0A3N7G625	U5GLQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.452
A0A3N7G882	B9HAP9_POPTR	A0A3N7G882	B9HAP9	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.623

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