(5 nodes) RNA polymerase, RBP11-like subunit network (Populus trichocarpa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1Z5I7	RPOLD domain-containing protein. (311 aa)
	B9GIX0_POPTR	RNA_pol_L_2 domain-containing protein. (102 aa)
	B9GFY9_POPTR	RPOLD domain-containing protein. (390 aa)
	A9PCB4_POPTR	RNA_pol_L_2 domain-containing protein. (116 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (339 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1Z5I7	A9PCB4_POPTR	A0A2K1Z5I7	A9PCB4	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.996
A0A2K1Z5I7	B9GFY9_POPTR	A0A2K1Z5I7	B9GFY9	RPOLD domain-containing protein.	RPOLD domain-containing protein.	0.874
A0A2K1Z5I7	B9GIX0_POPTR	A0A2K1Z5I7	B9GIX0	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.994
A0A2K1Z5I7	rpoA	A0A2K1Z5I7	A4GYU3	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.842
A9PCB4_POPTR	A0A2K1Z5I7	A9PCB4	A0A2K1Z5I7	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.996
A9PCB4_POPTR	B9GFY9_POPTR	A9PCB4	B9GFY9	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.986
A9PCB4_POPTR	B9GIX0_POPTR	A9PCB4	B9GIX0	RNA_pol_L_2 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.750
B9GFY9_POPTR	A0A2K1Z5I7	B9GFY9	A0A2K1Z5I7	RPOLD domain-containing protein.	RPOLD domain-containing protein.	0.874
B9GFY9_POPTR	A9PCB4_POPTR	B9GFY9	A9PCB4	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.986
B9GFY9_POPTR	B9GIX0_POPTR	B9GFY9	B9GIX0	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
B9GFY9_POPTR	rpoA	B9GFY9	A4GYU3	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.842
B9GIX0_POPTR	A0A2K1Z5I7	B9GIX0	A0A2K1Z5I7	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.994
B9GIX0_POPTR	A9PCB4_POPTR	B9GIX0	A9PCB4	RNA_pol_L_2 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.750
B9GIX0_POPTR	B9GFY9_POPTR	B9GIX0	B9GFY9	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999
rpoA	A0A2K1Z5I7	A4GYU3	A0A2K1Z5I7	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.842
rpoA	B9GFY9_POPTR	A4GYU3	B9GFY9	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.842

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