43 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1WVQ8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (721 aa)
	A0A2K1XH10	Nuclear pore protein. (863 aa)
	A0A2K1XY75	Small ubiquitin-related modifier. (104 aa)
	A0A2K1ZD17	Uncharacterized protein. (802 aa)
	A0A2K1ZGP8	Uncharacterized protein. (1494 aa)
	A0A2K2A7A5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (227 aa)
	A0A2K2AP47	C2H2-type domain-containing protein. (407 aa)
	A0A2K2AT33	Uncharacterized protein. (114 aa)
	A0A2K2B5V5	RanBD1 domain-containing protein. (474 aa)
	A0A2K2BU46	DUF5311 domain-containing protein. (1511 aa)
	A0A2K2C870	Uncharacterized protein. (1948 aa)
	A0A3N7E902	RanBD1 domain-containing protein. (465 aa)
	A0A3N7EIX8	Uncharacterized protein. (61 aa)
	A0A3N7EVQ4	Uncharacterized protein. (237 aa)
	A0A3N7F2H4	Uncharacterized protein. (1884 aa)
	A0A3N7FHU1	Nup54 domain-containing protein. (149 aa)
	A0A3N7FJX5	Uncharacterized protein. (1971 aa)
	A0A3N7FRR8	Uncharacterized protein. (106 aa)
	A0A3N7G7W1	Nup54 domain-containing protein. (217 aa)
	A0A3N7G994	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
	A0A3N7GSG1	TPR_MLP1_2 domain-containing protein. (2086 aa)
	A9PA83_POPTR	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A9PAA6_POPTR	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	A9PBA3_POPTR	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (325 aa)
	A9PEJ9_POPTR	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (161 aa)
	A9PFC1_POPTR	Uncharacterized protein. (449 aa)
	A9PGX8_POPTR	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (161 aa)
	B9GGL5_POPTR	Nuclear pore complex protein NUP35. (329 aa)
	B9GL77_POPTR	Uncharacterized protein. (67 aa)
	B9GMC9_POPTR	WD_REPEATS_REGION domain-containing protein. (371 aa)
	B9GR15_POPTR	Uncharacterized protein. (291 aa)
	B9GTT8_POPTR	Small ubiquitin-related modifier. (105 aa)
	B9GTT9_POPTR	Small ubiquitin-related modifier. (103 aa)
	B9H0B7_POPTR	WD_REPEATS_REGION domain-containing protein. (349 aa)
	B9HT86_POPTR	Nup54 domain-containing protein. (384 aa)
	B9I075_POPTR	C2H2-type domain-containing protein. (439 aa)
	B9I510_POPTR	Nuclear pore protein. (863 aa)
	B9IAK0_POPTR	Small ubiquitin-related modifier. (103 aa)
	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). (141 aa)
	B9N1C1_POPTR	Uncharacterized protein. (211 aa)
	U5G263_POPTR	Uncharacterized protein. (807 aa)
	U5GTD5_POPTR	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1092 aa)
	U5GX07_POPTR	C2H2-type domain-containing protein. (440 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WVQ8	A0A2K1XH10	A0A2K1WVQ8	A0A2K1XH10	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.969
A0A2K1WVQ8	A0A2K1XY75	A0A2K1WVQ8	A0A2K1XY75	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Small ubiquitin-related modifier.	0.600
A0A2K1WVQ8	A0A2K1ZD17	A0A2K1WVQ8	A0A2K1ZD17	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.971
A0A2K1WVQ8	A0A2K1ZGP8	A0A2K1WVQ8	A0A2K1ZGP8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.974
A0A2K1WVQ8	A0A2K2AP47	A0A2K1WVQ8	A0A2K2AP47	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	C2H2-type domain-containing protein.	0.949
A0A2K1WVQ8	A0A2K2AT33	A0A2K1WVQ8	A0A2K2AT33	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.849
A0A2K1WVQ8	A0A2K2B5V5	A0A2K1WVQ8	A0A2K2B5V5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	RanBD1 domain-containing protein.	0.793
A0A2K1WVQ8	A0A2K2BU46	A0A2K1WVQ8	A0A2K2BU46	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	DUF5311 domain-containing protein.	0.990
A0A2K1WVQ8	A0A2K2C870	A0A2K1WVQ8	A0A2K2C870	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.931
A0A2K1WVQ8	A0A3N7E902	A0A2K1WVQ8	A0A3N7E902	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	RanBD1 domain-containing protein.	0.793
A0A2K1WVQ8	A0A3N7EVQ4	A0A2K1WVQ8	A0A3N7EVQ4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.896
A0A2K1WVQ8	A0A3N7F2H4	A0A2K1WVQ8	A0A3N7F2H4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.988
A0A2K1WVQ8	A0A3N7FHU1	A0A2K1WVQ8	A0A3N7FHU1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nup54 domain-containing protein.	0.961
A0A2K1WVQ8	A0A3N7FJX5	A0A2K1WVQ8	A0A3N7FJX5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.896
A0A2K1WVQ8	A0A3N7FRR8	A0A2K1WVQ8	A0A3N7FRR8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.974
A0A2K1WVQ8	A0A3N7G7W1	A0A2K1WVQ8	A0A3N7G7W1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nup54 domain-containing protein.	0.963
A0A2K1WVQ8	A0A3N7GSG1	A0A2K1WVQ8	A0A3N7GSG1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	TPR_MLP1_2 domain-containing protein.	0.911
A0A2K1WVQ8	A9PAA6_POPTR	A0A2K1WVQ8	A9PAA6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.627
A0A2K1WVQ8	A9PBA3_POPTR	A0A2K1WVQ8	A9PBA3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.989
A0A2K1WVQ8	A9PEJ9_POPTR	A0A2K1WVQ8	A9PEJ9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.627

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