STRINGSTRING
A9P863_POPTR A9P863_POPTR A0A2K1XN87 A0A2K1XN87 A0A2K1YC75 A0A2K1YC75 A0A2K1ZWQ0 A0A2K1ZWQ0 A0A2K2AK99 A0A2K2AK99 A0A2K2AS36 A0A2K2AS36 A0A2K2B417 A0A2K2B417 A0A2K2BXI0 A0A2K2BXI0 A0A2K2C1A8 A0A2K2C1A8 A0A2K2CBJ4 A0A2K2CBJ4 A0A3N7EIX8 A0A3N7EIX8 A0A3N7ELV5 A0A3N7ELV5 A0A3N7FII9 A0A3N7FII9 A0A3N7G994 A0A3N7G994 A0A3N7GHC3 A0A3N7GHC3 A0A3N7HME5 A0A3N7HME5 A9P8M2_POPTR A9P8M2_POPTR A9P8Q5_POPTR A9P8Q5_POPTR A9PA83_POPTR A9PA83_POPTR A9PC90_POPTR A9PC90_POPTR A9PDD5_POPTR A9PDD5_POPTR B9GFJ5_POPTR B9GFJ5_POPTR B9HUV8_POPTR B9HUV8_POPTR B9I013_POPTR B9I013_POPTR B9IND8_POPTR B9IND8_POPTR B9N576_POPTR B9N576_POPTR U5FKY2_POPTR U5FKY2_POPTR U5FMJ8_POPTR U5FMJ8_POPTR U5G1M0_POPTR U5G1M0_POPTR U5GCI2_POPTR U5GCI2_POPTR U5GKP7_POPTR U5GKP7_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A9P863_POPTRUbiquitin-like domain-containing protein. (156 aa)
A0A2K1XN87FHA domain-containing protein. (517 aa)
A0A2K1YC75Ubiquitin-like domain-containing protein. (203 aa)
A0A2K1ZWQ0Ubiquitin-like domain-containing protein. (147 aa)
A0A2K2AK99Protein kinase domain-containing protein. (536 aa)
A0A2K2AS36Histone H2B; Belongs to the histone H2B family. (149 aa)
A0A2K2B417Uncharacterized protein. (69 aa)
A0A2K2BXI0Uncharacterized protein. (322 aa)
A0A2K2C1A8Histone domain-containing protein; Belongs to the histone H2B family. (163 aa)
A0A2K2CBJ4Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (730 aa)
A0A3N7EIX8Uncharacterized protein. (61 aa)
A0A3N7ELV5Ubiquitin-like domain-containing protein. (202 aa)
A0A3N7FII9Histone H2B; Belongs to the histone H2B family. (148 aa)
A0A3N7G994Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
A0A3N7GHC3Histone H2B; Belongs to the histone H2B family. (230 aa)
A0A3N7HME5Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3036 aa)
A9P8M2_POPTRUbiquitin-like domain-containing protein. (156 aa)
A9P8Q5_POPTRHistone H2B; Belongs to the histone H2B family. (139 aa)
A9PA83_POPTRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A9PC90_POPTRHistone H2B; Belongs to the histone H2B family. (139 aa)
A9PDD5_POPTRHistone H2B; Belongs to the histone H2B family. (143 aa)
B9GFJ5_POPTRZinc-hook domain-containing protein. (1316 aa)
B9HUV8_POPTRHistone H2B; Belongs to the histone H2B family. (140 aa)
B9I013_POPTRChlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. (231 aa)
B9IND8_POPTRUncharacterized protein. (259 aa)
B9N576_POPTRChlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. (263 aa)
U5FKY2_POPTRUbiquitin-like domain-containing protein. (123 aa)
U5FMJ8_POPTRUbiquitin-like domain-containing protein. (156 aa)
U5G1M0_POPTRHistone H2B; Belongs to the histone H2B family. (145 aa)
U5GCI2_POPTRHistone H2B; Belongs to the histone H2B family. (148 aa)
U5GKP7_POPTRHistone H2B; Belongs to the histone H2B family. (147 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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