33 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9H3C8_POPTR	Uncharacterized protein. (136 aa)
	POPTR_T157400	Uncharacterized protein. (158 aa)
	POPTR_T157100	Uncharacterized protein. (161 aa)
	A0A2K1X7G7	Uncharacterized protein. (104 aa)
	A0A2K1XZE2	Uncharacterized protein. (209 aa)
	A0A2K1YJJ7	Uncharacterized protein. (164 aa)
	A0A2K2A391	Uncharacterized protein. (150 aa)
	A0A2K2AQE2	Uncharacterized protein. (99 aa)
	A0A2K2BAP7	Uncharacterized protein. (177 aa)
	A0A2K2BLV3	Uncharacterized protein. (68 aa)
	A0A2K2BQH4	Uncharacterized protein. (160 aa)
	A0A3N7FYU0	Uncharacterized protein. (220 aa)
	A0A3N7G6Q1	Uncharacterized protein. (178 aa)
	A0A3N7GFH1	Uncharacterized protein. (182 aa)
	A9P923_POPTR	Uncharacterized protein. (170 aa)
	A9PAE0_POPTR	Uncharacterized protein. (158 aa)
	A9PAU7_POPTR	Uncharacterized protein. (163 aa)
	A9PCC0_POPTR	Uncharacterized protein. (167 aa)
	A9PCV4_POPTR	Uncharacterized protein. (175 aa)
	A9PF14_POPTR	Uncharacterized protein. (162 aa)
	POPTR_T016800	Uncharacterized protein. (150 aa)
	B9GK79_POPTR	Uncharacterized protein. (155 aa)
	B9GLI0_POPTR	Uncharacterized protein. (176 aa)
	B9GNH0_POPTR	Uncharacterized protein. (181 aa)
	B9GY96_POPTR	Uncharacterized protein. (158 aa)
	B9H2B8_POPTR	Uncharacterized protein. (145 aa)
	B9HD72_POPTR	Uncharacterized protein. (170 aa)
	B9HXM8_POPTR	Uncharacterized protein. (178 aa)
	B9HYT3_POPTR	Uncharacterized protein. (162 aa)
	B9I9Q1_POPTR	Uncharacterized protein. (173 aa)
	B9IB30_POPTR	Uncharacterized protein. (184 aa)
	U5GD69_POPTR	Uncharacterized protein. (193 aa)
	U5GUC8_POPTR	Uncharacterized protein. (165 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1YJJ7	A0A3N7G6Q1	A0A2K1YJJ7	A0A3N7G6Q1	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A2K1YJJ7	B9HXM8_POPTR	A0A2K1YJJ7	B9HXM8	Uncharacterized protein.	Uncharacterized protein.	0.490
A0A2K2BLV3	A0A3N7GFH1	A0A2K2BLV3	A0A3N7GFH1	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A2K2BLV3	A9PAE0_POPTR	A0A2K2BLV3	A9PAE0	Uncharacterized protein.	Uncharacterized protein.	0.460
A0A2K2BLV3	A9PCV4_POPTR	A0A2K2BLV3	A9PCV4	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A2K2BLV3	A9PF14_POPTR	A0A2K2BLV3	A9PF14	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A2K2BLV3	B9H2B8_POPTR	A0A2K2BLV3	B9H2B8	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A3N7FYU0	B9H2B8_POPTR	A0A3N7FYU0	B9H2B8	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A3N7G6Q1	A0A2K1YJJ7	A0A3N7G6Q1	A0A2K1YJJ7	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A3N7G6Q1	U5GUC8_POPTR	A0A3N7G6Q1	U5GUC8	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A3N7GFH1	A0A2K2BLV3	A0A3N7GFH1	A0A2K2BLV3	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A3N7GFH1	B9GNH0_POPTR	A0A3N7GFH1	B9GNH0	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A3N7GFH1	B9IB30_POPTR	A0A3N7GFH1	B9IB30	Uncharacterized protein.	Uncharacterized protein.	0.557
A9PAE0_POPTR	A0A2K2BLV3	A9PAE0	A0A2K2BLV3	Uncharacterized protein.	Uncharacterized protein.	0.460
A9PAE0_POPTR	B9GNH0_POPTR	A9PAE0	B9GNH0	Uncharacterized protein.	Uncharacterized protein.	0.473
A9PAE0_POPTR	B9HYT3_POPTR	A9PAE0	B9HYT3	Uncharacterized protein.	Uncharacterized protein.	0.424
A9PAE0_POPTR	B9IB30_POPTR	A9PAE0	B9IB30	Uncharacterized protein.	Uncharacterized protein.	0.473
A9PAU7_POPTR	B9GK79_POPTR	A9PAU7	B9GK79	Uncharacterized protein.	Uncharacterized protein.	0.482
A9PCV4_POPTR	A0A2K2BLV3	A9PCV4	A0A2K2BLV3	Uncharacterized protein.	Uncharacterized protein.	0.512
A9PF14_POPTR	A0A2K2BLV3	A9PF14	A0A2K2BLV3	Uncharacterized protein.	Uncharacterized protein.	0.497

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