30 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9GVE6_POPTR	Uncharacterized protein. (340 aa)
	B2Z6R4_POPTR	Phenylalanine ammonia-lyase. (711 aa)
	B2Z6R3_POPTR	Phenylalanine ammonia-lyase. (711 aa)
	B2Z6R1_POPTR	Phenylalanine ammonia-lyase. (714 aa)
	B2Z6R0_POPTR	Phenylalanine ammonia-lyase. (715 aa)
	A9PCS3_POPTR	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	A9PA83_POPTR	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A9P8T6_POPTR	Uncharacterized protein. (377 aa)
	A9P7V5_POPTR	Pyr_redox_2 domain-containing protein. (434 aa)
	A4ZSZ4_POPTR	Actin. (377 aa)
	rps8	30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. (134 aa)
	A0A3N7G994	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
	A0A2K2C547	Uncharacterized protein. (906 aa)
	A0A2K2AYN8	Uncharacterized protein; Belongs to the heat shock protein 70 family. (705 aa)
	A0A2K2AH68	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (480 aa)
	A0A2K1Z4L9	Uncharacterized protein. (1298 aa)
	A0A2K1YYM0	Phenylalanine ammonia-lyase. (707 aa)
	A0A2K1XNT9	Uncharacterized protein. (425 aa)
	U7E2Z8_POPTR	Stromal 70 kDa heat shock-related family protein; Belongs to the heat shock protein 70 family. (706 aa)
	U5FHM5_POPTR	PKS_ER domain-containing protein. (359 aa)
	B9N308_POPTR	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (712 aa)
	B9MUJ5_POPTR	Uncharacterized protein. (342 aa)
	B9MU03_POPTR	RING-type domain-containing protein. (718 aa)
	B9ILY5_POPTR	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (712 aa)
	B9IGT1_POPTR	Uncharacterized protein. (231 aa)
	B9IFW6_POPTR	TOG domain-containing protein. (395 aa)
	B9HBT8_POPTR	TOG domain-containing protein. (395 aa)
	B9H6U7_POPTR	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (692 aa)
	B9H199_POPTR	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	B9GMX6_POPTR	Fes1 domain-containing protein. (400 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1XNT9	A0A2K1Z4L9	A0A2K1XNT9	A0A2K1Z4L9	Uncharacterized protein.	Uncharacterized protein.	0.668
A0A2K1XNT9	A0A2K2AYN8	A0A2K1XNT9	A0A2K2AYN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.643
A0A2K1XNT9	A0A2K2C547	A0A2K1XNT9	A0A2K2C547	Uncharacterized protein.	Uncharacterized protein.	0.668
A0A2K1XNT9	A9PCS3_POPTR	A0A2K1XNT9	A9PCS3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.756
A0A2K1XNT9	B9GMX6_POPTR	A0A2K1XNT9	B9GMX6	Uncharacterized protein.	Fes1 domain-containing protein.	0.700
A0A2K1XNT9	B9GVE6_POPTR	A0A2K1XNT9	B9GVE6	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A2K1XNT9	B9H199_POPTR	A0A2K1XNT9	B9H199	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.763
A0A2K1XNT9	B9H6U7_POPTR	A0A2K1XNT9	B9H6U7	Uncharacterized protein.	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.496
A0A2K1XNT9	B9HBT8_POPTR	A0A2K1XNT9	B9HBT8	Uncharacterized protein.	TOG domain-containing protein.	0.738
A0A2K1XNT9	B9IFW6_POPTR	A0A2K1XNT9	B9IFW6	Uncharacterized protein.	TOG domain-containing protein.	0.738
A0A2K1XNT9	B9IGT1_POPTR	A0A2K1XNT9	B9IGT1	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A2K1XNT9	B9ILY5_POPTR	A0A2K1XNT9	B9ILY5	Uncharacterized protein.	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.496
A0A2K1XNT9	B9MU03_POPTR	A0A2K1XNT9	B9MU03	Uncharacterized protein.	RING-type domain-containing protein.	0.628
A0A2K1XNT9	B9MUJ5_POPTR	A0A2K1XNT9	B9MUJ5	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A2K1XNT9	B9N308_POPTR	A0A2K1XNT9	B9N308	Uncharacterized protein.	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	0.496
A0A2K1XNT9	U5FHM5_POPTR	A0A2K1XNT9	U5FHM5	Uncharacterized protein.	PKS_ER domain-containing protein.	0.628
A0A2K1XNT9	U7E2Z8_POPTR	A0A2K1XNT9	U7E2Z8	Uncharacterized protein.	Stromal 70 kDa heat shock-related family protein; Belongs to the heat shock protein 70 family.	0.643
A0A2K1YYM0	A4ZSZ4_POPTR	A0A2K1YYM0	A4ZSZ4	Phenylalanine ammonia-lyase.	Actin.	0.576
A0A2K1YYM0	A9P8T6_POPTR	A0A2K1YYM0	A9P8T6	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.576
A0A2K1Z4L9	A0A2K1XNT9	A0A2K1Z4L9	A0A2K1XNT9	Uncharacterized protein.	Uncharacterized protein.	0.668

page 1 of 19

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About