STRINGSTRING
B9GGG8_POPTR B9GGG8_POPTR B9GSH7_POPTR B9GSH7_POPTR MYB221 MYB221 B9H662_POPTR B9H662_POPTR B9HIM5_POPTR B9HIM5_POPTR MYB20 MYB20 MYB156 MYB156 B9I3D0_POPTR B9I3D0_POPTR B9HX36_POPTR B9HX36_POPTR U5GGN6_POPTR U5GGN6_POPTR U5GE99_POPTR U5GE99_POPTR MYB2 MYB2 MYB21 MYB21 B9N3A0_POPTR B9N3A0_POPTR B9MZ37_POPTR B9MZ37_POPTR B9IJZ4_POPTR B9IJZ4_POPTR MYB167 MYB167 B9IEX4_POPTR B9IEX4_POPTR A0A2K1Y0L1 A0A2K1Y0L1 A0A2K1Y254 A0A2K1Y254 A0A2K1Z3Q6 A0A2K1Z3Q6 A0A2K1ZE65 A0A2K1ZE65 A0A2K2C1U1 A0A2K2C1U1 A0A2K2C482 A0A2K2C482 A0A3N7FRP7 A0A3N7FRP7 A0A3N7G994 A0A3N7G994 A9P8A2_POPTR A9P8A2_POPTR A9PA83_POPTR A9PA83_POPTR A9PDT9_POPTR A9PDT9_POPTR A9PFZ1_POPTR A9PFZ1_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B9GGG8_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (429 aa)
B9GSH7_POPTRUncharacterized protein. (153 aa)
MYB221MYB transcription factor. (268 aa)
B9H662_POPTRCatalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (492 aa)
B9HIM5_POPTRUncharacterized protein. (173 aa)
MYB20MYB transcription factor. (333 aa)
MYB156MYB transcription factor. (271 aa)
B9I3D0_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (440 aa)
B9HX36_POPTRUncharacterized protein. (173 aa)
U5GGN6_POPTRUncharacterized protein. (149 aa)
U5GE99_POPTRZeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (589 aa)
MYB2MYB transcription factor. (333 aa)
MYB21MYB transcription factor. (332 aa)
B9N3A0_POPTRUncharacterized protein; Belongs to the calmodulin family. (149 aa)
B9MZ37_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (501 aa)
B9IJZ4_POPTRUncharacterized protein. (212 aa)
MYB167MYB transcription factor. (243 aa)
B9IEX4_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (467 aa)
A0A2K1Y0L1Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (592 aa)
A0A2K1Y254Uncharacterized protein. (463 aa)
A0A2K1Z3Q6Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family. (585 aa)
A0A2K1ZE65Uncharacterized protein. (169 aa)
A0A2K2C1U1Uncharacterized protein; Belongs to the calmodulin family. (191 aa)
A0A2K2C482Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family. (586 aa)
A0A3N7FRP7Uncharacterized protein. (210 aa)
A0A3N7G994Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
A9P8A2_POPTRUncharacterized protein; Belongs to the calmodulin family. (149 aa)
A9PA83_POPTRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A9PDT9_POPTRUncharacterized protein; Belongs to the calmodulin family. (149 aa)
A9PFZ1_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (499 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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