STRINGSTRING
A9PA83_POPTR A9PA83_POPTR A0A3N7G994 A0A3N7G994 A9PFZ1_POPTR A9PFZ1_POPTR B9GGG8_POPTR B9GGG8_POPTR B9I3D0_POPTR B9I3D0_POPTR B9IEX4_POPTR B9IEX4_POPTR B9MZ37_POPTR B9MZ37_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A9PA83_POPTRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A0A3N7G994Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
A9PFZ1_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (499 aa)
B9GGG8_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (429 aa)
B9I3D0_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (440 aa)
B9IEX4_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (467 aa)
B9MZ37_POPTRHistone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (501 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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