STRINGSTRING
A0A2K1XY75 A0A2K1XY75 A0A2K2AS36 A0A2K2AS36 A0A3N7FII9 A0A3N7FII9 A0A3N7G994 A0A3N7G994 A0A3N7GHC3 A0A3N7GHC3 A9P8Q5_POPTR A9P8Q5_POPTR A9PA83_POPTR A9PA83_POPTR A9PC90_POPTR A9PC90_POPTR A9PDD5_POPTR A9PDD5_POPTR B9GTT8_POPTR B9GTT8_POPTR B9GTT9_POPTR B9GTT9_POPTR B9HUV8_POPTR B9HUV8_POPTR B9IAK0_POPTR B9IAK0_POPTR U5G1M0_POPTR U5G1M0_POPTR U5GCI2_POPTR U5GCI2_POPTR U5GKP7_POPTR U5GKP7_POPTR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A2K1XY75Small ubiquitin-related modifier. (104 aa)
A0A2K2AS36Histone H2B; Belongs to the histone H2B family. (149 aa)
A0A3N7FII9Histone H2B; Belongs to the histone H2B family. (148 aa)
A0A3N7G994Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
A0A3N7GHC3Histone H2B; Belongs to the histone H2B family. (230 aa)
A9P8Q5_POPTRHistone H2B; Belongs to the histone H2B family. (139 aa)
A9PA83_POPTRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A9PC90_POPTRHistone H2B; Belongs to the histone H2B family. (139 aa)
A9PDD5_POPTRHistone H2B; Belongs to the histone H2B family. (143 aa)
B9GTT8_POPTRSmall ubiquitin-related modifier. (105 aa)
B9GTT9_POPTRSmall ubiquitin-related modifier. (103 aa)
B9HUV8_POPTRHistone H2B; Belongs to the histone H2B family. (140 aa)
B9IAK0_POPTRSmall ubiquitin-related modifier. (103 aa)
U5G1M0_POPTRHistone H2B; Belongs to the histone H2B family. (145 aa)
U5GCI2_POPTRHistone H2B; Belongs to the histone H2B family. (148 aa)
U5GKP7_POPTRHistone H2B; Belongs to the histone H2B family. (147 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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