STRINGSTRING
U5G9H3_POPTR U5G9H3_POPTR B9I999_POPTR B9I999_POPTR RDM1 RDM1 B9HG17_POPTR B9HG17_POPTR A9PA83_POPTR A9PA83_POPTR A0A3N7G994 A0A3N7G994 A0A3N7FUL6 A0A3N7FUL6 A0A2K1XN90 A0A2K1XN90 A0A2K1WP38 A0A2K1WP38
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
U5G9H3_POPTRBHLH domain-containing protein. (741 aa)
B9I999_POPTRBHLH domain-containing protein. (561 aa)
RDM1RNA-directed DNA methylation 1. (175 aa)
B9HG17_POPTRUncharacterized protein. (1747 aa)
A9PA83_POPTRHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A0A3N7G994Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
A0A3N7FUL6BHLH domain-containing protein. (714 aa)
A0A2K1XN90Uncharacterized protein. (1736 aa)
A0A2K1WP38Uncharacterized protein. (299 aa)
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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