35 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3N7G592	Uncharacterized protein. (1038 aa)
	A0A2K1WXV1	RanBP2-type domain-containing protein. (376 aa)
	A0A2K1XHL6	Uncharacterized protein. (457 aa)
	A0A2K1XZS4	Uncharacterized protein. (960 aa)
	A0A2K1Y240	Uncharacterized protein. (896 aa)
	A0A2K1YS10	Uncharacterized protein. (544 aa)
	A0A2K1YW30	RBR-type E3 ubiquitin transferase. (591 aa)
	A0A2K1ZE17	Uncharacterized protein. (384 aa)
	A0A2K2A394	RanBP2-type domain-containing protein. (377 aa)
	A0A2K2AAY6	Uncharacterized protein. (834 aa)
	A0A2K2AN93	RanBP2-type domain-containing protein. (524 aa)
	A0A2K2BI53	RBR-type E3 ubiquitin transferase. (608 aa)
	A0A2K2C507	Uncharacterized protein. (449 aa)
	A0A3N7EWL8	Uncharacterized protein. (1041 aa)
	A0A3N7F346	Uncharacterized protein. (137 aa)
	A0A3N7FR57	Uncharacterized protein. (439 aa)
	A0A3N7G9W8	Uncharacterized protein. (197 aa)
	A0A3N7H5Z9	RanBP2-type domain-containing protein. (111 aa)
	A0A3N7HB25	Uncharacterized protein. (617 aa)
	A9P992_POPTR	Uncharacterized protein. (159 aa)
	A9PB85_POPTR	Uncharacterized protein. (151 aa)
	B9GP09_POPTR	RBR-type E3 ubiquitin transferase. (566 aa)
	B9GWD5_POPTR	Uncharacterized protein. (151 aa)
	B9GZQ6_POPTR	Uncharacterized protein. (283 aa)
	B9HHY6_POPTR	RBR-type E3 ubiquitin transferase. (591 aa)
	B9HK71_POPTR	Uncharacterized protein. (331 aa)
	B9HXC8_POPTR	RanBP2-type domain-containing protein. (328 aa)
	B9HY23_POPTR	Uncharacterized protein. (387 aa)
	B9IKV1_POPTR	Uncharacterized protein. (155 aa)
	B9ILG3_POPTR	Tr-type G domain-containing protein. (661 aa)
	B9MXH1_POPTR	Uncharacterized protein. (329 aa)
	B9NA53_POPTR	RRM domain-containing protein. (253 aa)
	U5G3L7_POPTR	Uncharacterized protein. (443 aa)
	U5GEV8_POPTR	Uncharacterized protein. (671 aa)
	U5GTH4_POPTR	Uncharacterized protein. (291 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WXV1	A0A2K1ZE17	A0A2K1WXV1	A0A2K1ZE17	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.473
A0A2K1WXV1	A0A2K2AN93	A0A2K1WXV1	A0A2K2AN93	RanBP2-type domain-containing protein.	RanBP2-type domain-containing protein.	0.557
A0A2K1WXV1	A0A2K2C507	A0A2K1WXV1	A0A2K2C507	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.552
A0A2K1WXV1	A0A3N7EWL8	A0A2K1WXV1	A0A3N7EWL8	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.405
A0A2K1WXV1	A0A3N7FR57	A0A2K1WXV1	A0A3N7FR57	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1WXV1	A0A3N7G592	A0A2K1WXV1	A0A3N7G592	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.405
A0A2K1WXV1	A0A3N7H5Z9	A0A2K1WXV1	A0A3N7H5Z9	RanBP2-type domain-containing protein.	RanBP2-type domain-containing protein.	0.407
A0A2K1WXV1	B9HK71_POPTR	A0A2K1WXV1	B9HK71	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.407
A0A2K1WXV1	B9HXC8_POPTR	A0A2K1WXV1	B9HXC8	RanBP2-type domain-containing protein.	RanBP2-type domain-containing protein.	0.493
A0A2K1WXV1	B9HY23_POPTR	A0A2K1WXV1	B9HY23	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.473
A0A2K1WXV1	B9NA53_POPTR	A0A2K1WXV1	B9NA53	RanBP2-type domain-containing protein.	RRM domain-containing protein.	0.405
A0A2K1WXV1	U5G3L7_POPTR	A0A2K1WXV1	U5G3L7	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.424
A0A2K1WXV1	U5GTH4_POPTR	A0A2K1WXV1	U5GTH4	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.560
A0A2K1ZE17	A0A2K1WXV1	A0A2K1ZE17	A0A2K1WXV1	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.473
A0A2K1ZE17	A0A2K2A394	A0A2K1ZE17	A0A2K2A394	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.473
A0A2K1ZE17	A0A3N7EWL8	A0A2K1ZE17	A0A3N7EWL8	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A2K1ZE17	A0A3N7G592	A0A2K1ZE17	A0A3N7G592	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A2K1ZE17	B9NA53_POPTR	A0A2K1ZE17	B9NA53	Uncharacterized protein.	RRM domain-containing protein.	0.405
A0A2K2A394	A0A2K1ZE17	A0A2K2A394	A0A2K1ZE17	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.473
A0A2K2A394	A0A2K2AN93	A0A2K2A394	A0A2K2AN93	RanBP2-type domain-containing protein.	RanBP2-type domain-containing protein.	0.557

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