46 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K1WRD9	Uncharacterized protein. (455 aa)
	A0A2K1WUG9	WD_REPEATS_REGION domain-containing protein. (675 aa)
	A0A2K1X040	Uncharacterized protein. (1126 aa)
	A0A2K1X0K5	SRP40_C domain-containing protein. (471 aa)
	A0A2K1XZ83	Uncharacterized protein. (1124 aa)
	A0A2K1ZPJ1	Uncharacterized protein. (569 aa)
	A0A2K2A7U4	Uncharacterized protein. (900 aa)
	A0A2K2A8E3	Uncharacterized protein. (1090 aa)
	A0A2K2A9I9	LisH domain-containing protein. (1937 aa)
	A0A2K2AAI1	Uncharacterized protein. (1125 aa)
	A0A2K2ALF3	Uncharacterized protein. (1934 aa)
	A0A2K2ASB7	Uncharacterized protein. (1181 aa)
	A0A2K2B9R7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1916 aa)
	A0A2K2BCK6	Uncharacterized protein. (219 aa)
	A0A2K2BNS0	Uncharacterized protein. (778 aa)
	A0A2K2C0N2	Uncharacterized protein. (1144 aa)
	A0A2K2C581	Uncharacterized protein. (384 aa)
	A0A3N7ERN4	Uncharacterized protein. (657 aa)
	A0A3N7F287	Uncharacterized protein. (573 aa)
	A0A3N7FVT8	LisH domain-containing protein. (1617 aa)
	A0A3N7G1L8	Uncharacterized protein. (1138 aa)
	A0A3N7G5Z1	Uncharacterized protein. (963 aa)
	POPTR_T172036	LisH domain-containing protein. (937 aa)
	A0A3N7I308	Uncharacterized protein. (1101 aa)
	A9P7T7_POPTR	Uncharacterized protein. (384 aa)
	B9GMD9_POPTR	Uncharacterized protein. (766 aa)
	B9GSR3_POPTR	Uncharacterized protein. (580 aa)
	B9H0A2_POPTR	Uncharacterized protein. (785 aa)
	B9H250_POPTR	Uncharacterized protein. (226 aa)
	B9H4H1_POPTR	Uncharacterized protein. (215 aa)
	B9H856_POPTR	Uncharacterized protein. (581 aa)
	B9HA96_POPTR	Uncharacterized protein. (1132 aa)
	B9HAH3_POPTR	Uncharacterized protein. (1099 aa)
	B9HAH4_POPTR	Uncharacterized protein. (196 aa)
	B9HAW4_POPTR	Uncharacterized protein. (675 aa)
	B9HAX3_POPTR	SRP40_C domain-containing protein. (487 aa)
	B9HK11_POPTR	Uncharacterized protein. (529 aa)
	B9HM06_POPTR	LisH domain-containing protein. (263 aa)
	B9HM18_POPTR	Uncharacterized protein. (412 aa)
	B9HU03_POPTR	LisH domain-containing protein. (265 aa)
	B9HYM5_POPTR	Uncharacterized protein. (243 aa)
	B9I0X0_POPTR	Uncharacterized protein. (512 aa)
	B9I4M0_POPTR	Uncharacterized protein. (388 aa)
	B9ICU0_POPTR	Uncharacterized protein. (385 aa)
	B9ING1_POPTR	Uncharacterized protein. (1085 aa)
	U5FS03_POPTR	Uncharacterized protein. (1136 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WRD9	A0A2K2BCK6	A0A2K1WRD9	A0A2K2BCK6	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A2K1WRD9	A0A2K2C581	A0A2K1WRD9	A0A2K2C581	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A2K1WRD9	A9P7T7_POPTR	A0A2K1WRD9	A9P7T7	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A2K1WRD9	B9GSR3_POPTR	A0A2K1WRD9	B9GSR3	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A2K1WRD9	B9H250_POPTR	A0A2K1WRD9	B9H250	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A2K1WRD9	B9H4H1_POPTR	A0A2K1WRD9	B9H4H1	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A2K1WRD9	B9H856_POPTR	A0A2K1WRD9	B9H856	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A2K1WRD9	B9HK11_POPTR	A0A2K1WRD9	B9HK11	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A2K1WRD9	B9HM18_POPTR	A0A2K1WRD9	B9HM18	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A2K1WRD9	B9HYM5_POPTR	A0A2K1WRD9	B9HYM5	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A2K1WRD9	B9I4M0_POPTR	A0A2K1WRD9	B9I4M0	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A2K1WRD9	B9ICU0_POPTR	A0A2K1WRD9	B9ICU0	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A2K1WUG9	A0A2K2B9R7	A0A2K1WUG9	A0A2K2B9R7	WD_REPEATS_REGION domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.595
A0A2K1WUG9	A0A3N7FVT8	A0A2K1WUG9	A0A3N7FVT8	WD_REPEATS_REGION domain-containing protein.	LisH domain-containing protein.	0.595
A0A2K1WUG9	B9HAW4_POPTR	A0A2K1WUG9	B9HAW4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.900
A0A2K1WUG9	POPTR_T172036	A0A2K1WUG9	A0A3N7G8Z3	WD_REPEATS_REGION domain-containing protein.	LisH domain-containing protein.	0.595
A0A2K1X040	A0A2K2A7U4	A0A2K1X040	A0A2K2A7U4	Uncharacterized protein.	Uncharacterized protein.	0.452
A0A2K1X040	A0A2K2BNS0	A0A2K1X040	A0A2K2BNS0	Uncharacterized protein.	Uncharacterized protein.	0.477
A0A2K1X040	A0A3N7G5Z1	A0A2K1X040	A0A3N7G5Z1	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A2K1X040	B9GMD9_POPTR	A0A2K1X040	B9GMD9	Uncharacterized protein.	Uncharacterized protein.	0.450

page 1 of 14

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About