39 items (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	A0A2K1XFV1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1151 aa)
	A0A2K1YD70	Uncharacterized protein. (143 aa)
	A0A2K1Z5I7	RPOLD domain-containing protein. (311 aa)
	A0A2K1ZND6	Uncharacterized protein. (664 aa)
	A0A2K1ZXB6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1700 aa)
	A0A2K2AFX7	Uncharacterized protein. (292 aa)
	A0A2K2APS7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1198 aa)
	A0A2K2B0W8	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (241 aa)
	A0A2K2B1M0	Uncharacterized protein. (201 aa)
	A0A2K2B509	Uncharacterized protein. (325 aa)
	A0A2K2BDD2	Uncharacterized protein. (191 aa)
	A0A2K2C804	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1410 aa)
	A0A3N7FS84	Uncharacterized protein. (51 aa)
	A0A3N7G1H3	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (525 aa)
	A0A3N7GFA5	TFIIS-type domain-containing protein. (93 aa)
	rpoC2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
	rpoC1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (689 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1070 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (339 aa)
	A9PCB4_POPTR	RNA_pol_L_2 domain-containing protein. (116 aa)
	A9PF10_POPTR	Uncharacterized protein. (71 aa)
	A9PGQ8_POPTR	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (143 aa)
	B9GFY9_POPTR	RPOLD domain-containing protein. (390 aa)
	B9GGV6_POPTR	Uncharacterized protein. (176 aa)
	B9GIX0_POPTR	RNA_pol_L_2 domain-containing protein. (102 aa)
	B9GM22_POPTR	Uncharacterized protein. (233 aa)
	B9H5K4_POPTR	RPOL4c domain-containing protein. (138 aa)
	B9HIQ4_POPTR	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	B9I5C8_POPTR	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	B9I7D2_POPTR	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
	B9ID35_POPTR	Uncharacterized protein. (143 aa)
	B9IHS9_POPTR	Uncharacterized protein. (243 aa)
	B9MSX9_POPTR	Uncharacterized protein. (292 aa)
	B9N1A8_POPTR	Uncharacterized protein. (472 aa)
	B9N3V2_POPTR	RPOL4c domain-containing protein. (197 aa)
	B9N7D1_POPTR	Uncharacterized protein. (206 aa)
	U5FSJ3_POPTR	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (138 aa)
	U5FVM2_POPTR	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)
	U5GEY7_POPTR	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1837 aa)

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1XFV1	A0A2K1YD70	A0A2K1XFV1	A0A2K1YD70	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.995
A0A2K1XFV1	A0A2K1Z5I7	A0A2K1XFV1	A0A2K1Z5I7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.938
A0A2K1XFV1	A0A2K1ZND6	A0A2K1XFV1	A0A2K1ZND6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.996
A0A2K1XFV1	A0A2K1ZXB6	A0A2K1XFV1	A0A2K1ZXB6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.970
A0A2K1XFV1	A0A2K2AFX7	A0A2K1XFV1	A0A2K2AFX7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.992
A0A2K1XFV1	A0A2K2B0W8	A0A2K1XFV1	A0A2K2B0W8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.994
A0A2K1XFV1	A0A2K2B1M0	A0A2K1XFV1	A0A2K2B1M0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.562
A0A2K1XFV1	A0A2K2B509	A0A2K1XFV1	A0A2K2B509	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.992
A0A2K1XFV1	A0A2K2BDD2	A0A2K1XFV1	A0A2K2BDD2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.991
A0A2K1XFV1	A0A2K2C804	A0A2K1XFV1	A0A2K2C804	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A2K1XFV1	A0A3N7FS84	A0A2K1XFV1	A0A3N7FS84	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.988
A0A2K1XFV1	A0A3N7G1H3	A0A2K1XFV1	A0A3N7G1H3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A2K1XFV1	A0A3N7GFA5	A0A2K1XFV1	A0A3N7GFA5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIS-type domain-containing protein.	0.771
A0A2K1XFV1	A9PCB4_POPTR	A0A2K1XFV1	A9PCB4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.930
A0A2K1XFV1	A9PF10_POPTR	A0A2K1XFV1	A9PF10	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.995
A0A2K1XFV1	A9PGQ8_POPTR	A0A2K1XFV1	A9PGQ8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.992
A0A2K1XFV1	B9GFY9_POPTR	A0A2K1XFV1	B9GFY9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.997
A0A2K1XFV1	B9GGV6_POPTR	A0A2K1XFV1	B9GGV6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.790
A0A2K1XFV1	B9GIX0_POPTR	A0A2K1XFV1	B9GIX0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.996
A0A2K1XFV1	B9GM22_POPTR	A0A2K1XFV1	B9GM22	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.981

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