63 items (Salinispora tropica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	ABP53339.1	TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase. (387 aa)
	ABP54174.1	TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. (227 aa)
	ABP52574.1	PFAM: acyl-CoA dehydrogenase domain protein. (617 aa)
	ABP52513.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (384 aa)
	ABP55461.1	Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short-chain dehydrogenase/reductase SDR. (255 aa)
	ABP55278.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain. (399 aa)
	ABP53999.1	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (469 aa)
	ABP55062.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (335 aa)
	ABP55063.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (366 aa)
	ABP55068.1	PFAM: acyl-CoA dehydrogenase domain protein. (751 aa)
	ABP55073.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase. (549 aa)
	ABP55115.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain. (390 aa)
	ABP55119.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase. (528 aa)
	ABP55120.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase. (557 aa)
	ABP55122.1	PFAM: acyl-CoA dehydrogenase domain protein. (380 aa)
	ABP55123.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (339 aa)
	ABP55152.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain. (390 aa)
	ABP55157.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase. (516 aa)
	ABP55164.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain. (414 aa)
	ABP55622.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein. (334 aa)
	ABP55863.1	Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (368 aa)
	ABP55889.1	Coproporphyrinogen III oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (407 aa)
	ABP55997.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (145 aa)
	ABP56028.1	PFAM: protein of unknown function DUF742. (127 aa)
	ABP56188.1	PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding. (361 aa)
	ABP56199.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase. (637 aa)
	ABP56303.1	PFAM: protein of unknown function DUF742. (121 aa)
	ABP55248.1	Hypothetical protein. (333 aa)
	ABP56410.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (205 aa)
	ABP56411.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (542 aa)
	ABP56456.1	TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-1,4-lactone oxidase. (437 aa)
	ABP56496.1	TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase. (423 aa)
	ABP56693.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (387 aa)
	ABP56708.1	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (572 aa)
	ABP56754.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (388 aa)
	ABP56757.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (387 aa)
	ABP53618.1	Coenzyme F420-0 gamma-glutamyl ligase; PFAM: protein of unknown function DUF129. (243 aa)
	ABP53610.1	PFAM: protein of unknown function DUF129. (242 aa)
	ABP53420.1	TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129. (362 aa)
	ABP53411.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (387 aa)
	ABP55254.1	PFAM: acyl-CoA dehydrogenase domain protein. (380 aa)
	ABP54838.1	TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase. (375 aa)
	ABP54976.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (551 aa)
	ABP55053.1	PFAM: acyl-CoA dehydrogenase domain protein. (401 aa)
	ABP54028.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (403 aa)
	ABP54157.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (427 aa)
	ABP54173.1	TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (643 aa)
	ABP52621.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (404 aa)
	ABP54191.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (165 aa)
	pyrD	Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (338 aa)
	ABP54637.1	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (488 aa)
	ABP54708.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (380 aa)
	ABP55054.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (374 aa)
	ABP55059.1	PFAM: acyl-CoA dehydrogenase domain protein. (386 aa)
	ABP55061.1	PFAM: acyl-CoA dehydrogenase domain protein. (411 aa)
	dapB	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (260 aa)
	ABP55255.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (355 aa)
	ABP53295.1	PFAM: protein of unknown function DUF742. (125 aa)
	ABP53204.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (398 aa)
	ABP53161.1	PFAM: acyl-CoA dehydrogenase domain protein. (379 aa)
	ABP53160.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (385 aa)
	ABP52914.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain. (386 aa)
	ABP52647.1	Hypothetical protein. (160 aa)

Your Current Organism:

Salinispora tropica

NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABP52513.1	ABP53160.1	Strop_0028	Strop_0683	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.959
ABP52513.1	ABP54028.1	Strop_0028	Strop_1562	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.910
ABP52513.1	ABP56754.1	Strop_0028	Strop_4326	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.917
ABP52621.1	ABP53160.1	Strop_0136	Strop_0683	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.537
ABP52621.1	ABP55059.1	Strop_0136	Strop_2615	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein.	0.521
ABP52621.1	ABP55061.1	Strop_0136	Strop_2617	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein.	0.485
ABP52621.1	ABP55123.1	Strop_0136	Strop_2679	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.677
ABP52914.1	ABP53160.1	Strop_0429	Strop_0683	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.933
ABP52914.1	ABP54028.1	Strop_0429	Strop_1562	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.911
ABP52914.1	ABP55123.1	Strop_0429	Strop_2679	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.636
ABP52914.1	ABP55255.1	Strop_0429	Strop_2814	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.717
ABP52914.1	ABP56693.1	Strop_0429	Strop_4265	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.486
ABP52914.1	ABP56754.1	Strop_0429	Strop_4326	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.925
ABP53160.1	ABP52513.1	Strop_0683	Strop_0028	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.959
ABP53160.1	ABP52621.1	Strop_0683	Strop_0136	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.537
ABP53160.1	ABP52914.1	Strop_0683	Strop_0429	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.933
ABP53160.1	ABP53161.1	Strop_0683	Strop_0684	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein.	0.858
ABP53160.1	ABP54028.1	Strop_0683	Strop_1562	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.913
ABP53160.1	ABP54708.1	Strop_0683	Strop_2258	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.625
ABP53160.1	ABP55054.1	Strop_0683	Strop_2610	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.	0.626

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