Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABP52765.1 | ABP56170.1 | Strop_0280 | Strop_3739 | SMART: helicase c2. | PFAM: UvrD/REP helicase; HRDC domain protein. | 0.842 |
| ABP52765.1 | ABP56380.1 | Strop_0280 | Strop_3950 | SMART: helicase c2. | PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | 0.958 |
| ABP52765.1 | recD2 | Strop_0280 | Strop_0230 | SMART: helicase c2. | Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.628 |
| ABP52765.1 | topA | Strop_0280 | Strop_4027 | SMART: helicase c2. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.783 |
| ABP53005.1 | ABP56170.1 | Strop_0521 | Strop_3739 | Hypothetical protein. | PFAM: UvrD/REP helicase; HRDC domain protein. | 0.487 |
| ABP53005.1 | ABP56179.1 | Strop_0521 | Strop_3748 | Hypothetical protein. | PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.456 |
| ABP53005.1 | ABP56180.1 | Strop_0521 | Strop_3749 | Hypothetical protein. | PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.456 |
| ABP53005.1 | topA | Strop_0521 | Strop_4027 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.430 |
| ABP53052.1 | ABP54145.1 | Strop_0571 | Strop_1681 | Hypothetical protein. | PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller. | 0.939 |
| ABP53052.1 | ABP54230.1 | Strop_0571 | Strop_1767 | Hypothetical protein. | Hypothetical protein. | 0.864 |
| ABP53052.1 | ABP56170.1 | Strop_0571 | Strop_3739 | Hypothetical protein. | PFAM: UvrD/REP helicase; HRDC domain protein. | 0.479 |
| ABP53052.1 | gyrA | Strop_0571 | Strop_0009 | Hypothetical protein. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.939 |
| ABP53052.1 | topA | Strop_0571 | Strop_4027 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.402 |
| ABP53749.1 | ABP56170.1 | Strop_1279 | Strop_3739 | PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | PFAM: UvrD/REP helicase; HRDC domain protein. | 0.522 |
| ABP53749.1 | ABP56248.1 | Strop_1279 | Strop_3817 | PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase. | 0.620 |
| ABP53749.1 | ruvA | Strop_1279 | Strop_1809 | PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.708 |
| ABP53749.1 | ruvB | Strop_1279 | Strop_1810 | PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.601 |
| ABP53749.1 | topA | Strop_1279 | Strop_4027 | PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.686 |
| ABP53949.1 | ABP56170.1 | Strop_1483 | Strop_3739 | PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type. | PFAM: UvrD/REP helicase; HRDC domain protein. | 0.522 |
| ABP53949.1 | topA | Strop_1483 | Strop_4027 | PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.529 |
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