41 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSKMAP00000001244	Uncharacterized protein. (848 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (908 aa)
	ENSKMAP00000001302	GRIP domain-containing protein. (334 aa)
	LOC108237612	Zgc:193690. (469 aa)
	gle1	GLE1 RNA export mediator. (710 aa)
	nxf1	Zgc:153681. (663 aa)
	LOC108246866	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
	nup58	Nucleoporin 58. (590 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	LOC108249774	Uncharacterized protein. (420 aa)
	nup153	Nucleoporin 153. (1499 aa)
	cd164	CD164 molecule, sialomucin. (165 aa)
	nup98	Nucleoporin 98. (1811 aa)
	ppil6	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (293 aa)
	ENSKMAP00000012248	Uncharacterized protein. (64 aa)
	LOC108239511	Translocated promoter region a, nuclear basket protein. (2040 aa)
	nup155	Nucleoporin 155. (1367 aa)
	nup160	Nucleoporin 160. (1399 aa)
	nup188	Nucleoporin 188. (1712 aa)
	nup133	Nucleoporin 133. (1138 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (297 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	NUP54	Nucleoporin 54. (623 aa)
	nup37	Nucleoporin 37. (326 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2200 aa)
	nup210	Nucleoporin 210. (1882 aa)
	LOC108228363	Nucleoporin 50. (312 aa)
	LOC108231591	Nuclear receptor coactivator 5. (668 aa)
	LOC108231625	RRM domain-containing protein. (668 aa)
	NUP214	Nucleoporin 214. (1975 aa)
	LOC108244829	Uncharacterized protein. (562 aa)
	ENSKMAP00000022324	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (115 aa)
	nxt2	Nuclear transport factor 2-like export factor 2. (150 aa)
	NUP62	Nucleoporin 62. (552 aa)
	adgrb3	Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family. (1538 aa)
	ahctf1	AT hook containing transcription factor 1. (1209 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (821 aa)
	nup205	Nucleoporin 205. (1960 aa)
	nup43	Nucleoporin 43. (371 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000001244	ENSKMAP00000001302	ENSKMAP00000001244	ENSKMAP00000001302	Uncharacterized protein.	GRIP domain-containing protein.	0.899
ENSKMAP00000001244	LOC108228363	ENSKMAP00000001244	ENSKMAP00000019604	Uncharacterized protein.	Nucleoporin 50.	0.625
ENSKMAP00000001244	LOC108231591	ENSKMAP00000001244	ENSKMAP00000020344	Uncharacterized protein.	Nuclear receptor coactivator 5.	0.713
ENSKMAP00000001244	LOC108231625	ENSKMAP00000001244	ENSKMAP00000020386	Uncharacterized protein.	RRM domain-containing protein.	0.713
ENSKMAP00000001244	LOC108239511	ENSKMAP00000001244	ENSKMAP00000012648	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.597
ENSKMAP00000001244	LOC108244829	ENSKMAP00000001244	ENSKMAP00000020982	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSKMAP00000001244	LOC108249774	ENSKMAP00000001244	ENSKMAP00000008377	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSKMAP00000001244	NUP214	ENSKMAP00000001244	ENSKMAP00000020916	Uncharacterized protein.	Nucleoporin 214.	0.825
ENSKMAP00000001244	NUP54	ENSKMAP00000001244	ENSKMAP00000017428	Uncharacterized protein.	Nucleoporin 54.	0.843
ENSKMAP00000001244	NUP62	ENSKMAP00000001244	ENSKMAP00000023361	Uncharacterized protein.	Nucleoporin 62.	0.756
ENSKMAP00000001244	aaas	ENSKMAP00000001244	ENSKMAP00000015401	Uncharacterized protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.733
ENSKMAP00000001244	adgrb3	ENSKMAP00000001244	ENSKMAP00000024216	Uncharacterized protein.	Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family.	0.727
ENSKMAP00000001244	ahctf1	ENSKMAP00000001244	ENSKMAP00000026381	Uncharacterized protein.	AT hook containing transcription factor 1.	0.508
ENSKMAP00000001244	gle1	ENSKMAP00000001244	ENSKMAP00000005094	Uncharacterized protein.	GLE1 RNA export mediator.	0.608
ENSKMAP00000001244	ndc1	ENSKMAP00000001244	ENSKMAP00000028289	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.671
ENSKMAP00000001244	nup107	ENSKMAP00000001244	ENSKMAP00000001256	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.844
ENSKMAP00000001244	nup133	ENSKMAP00000001244	ENSKMAP00000014359	Uncharacterized protein.	Nucleoporin 133.	0.839
ENSKMAP00000001244	nup153	ENSKMAP00000001244	ENSKMAP00000008432	Uncharacterized protein.	Nucleoporin 153.	0.811
ENSKMAP00000001244	nup155	ENSKMAP00000001244	ENSKMAP00000012961	Uncharacterized protein.	Nucleoporin 155.	0.860
ENSKMAP00000001244	nup160	ENSKMAP00000001244	ENSKMAP00000013739	Uncharacterized protein.	Nucleoporin 160.	0.796