STRINGSTRING
cstf2 cstf2 ENSKMAP00000001637 ENSKMAP00000001637 pcf11 pcf11 cpsf1 cpsf1 LOC108249674 LOC108249674 CPSF3 CPSF3 cstf3 cstf3 clp1 clp1 ENSKMAP00000021047 ENSKMAP00000021047 sympk sympk papolg papolg cstf1 cstf1 cpsf2 cpsf2 LOC108241575 LOC108241575
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (491 aa)
ENSKMAP00000001637WD repeat domain 33. (267 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1568 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1227 aa)
LOC108249674Cleavage and polyadenylation specific factor 3. (686 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
ENSKMAP00000021047Cleavage and polyadenylation specific factor 4. (265 aa)
sympkSymplekin. (1221 aa)
papolgPoly(A) polymerase gamma. (835 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
LOC108241575FIP1 like 1b (S. cerevisiae). (541 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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