STRINGSTRING
stx18 stx18 LOC108248531 LOC108248531 LOC108230847 LOC108230847 snx15 snx15 LOC108238909 LOC108238909 bnip1 bnip1 rint1 rint1 nbas nbas rps6kc1 rps6kc1 zw10 zw10 use1 use1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
stx18Syntaxin 18. (323 aa)
LOC108248531SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family. (217 aa)
LOC108230847SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (219 aa)
snx15Sorting nexin 15. (387 aa)
LOC108238909BCL2 interacting protein 1b. (230 aa)
bnip1BCL2 interacting protein 1a. (228 aa)
rint1RAD50 interactor 1. (786 aa)
nbasNeuroblastoma amplified sequence. (2364 aa)
rps6kc1Ribosomal protein S6 kinase polypeptide 1. (1128 aa)
zw10Zw10 kinetochore protein. (766 aa)
use1Unconventional SNARE in the ER 1 homolog (S. cerevisiae). (257 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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