STRINGSTRING
rfc1 rfc1 RPA1 RPA1 ENSKMAP00000000467 ENSKMAP00000000467 Atm Atm ENSKMAP00000001053 ENSKMAP00000001053 rev1 rev1 rfc5 rfc5 xrcc3 xrcc3 CDCA7L CDCA7L top3b top3b cdc7 cdc7 msh3 msh3 mus81 mus81 gins1 gins1 xpc xpc mlh3 mlh3 pold2 pold2 pcna pcna brip1 brip1 LOC108244487 LOC108244487 cdc45 cdc45 nbn nbn chtf8 chtf8 cdc6 cdc6 dbf4 dbf4 mad2l2 mad2l2 mcm9 mcm9 ENSKMAP00000005281 ENSKMAP00000005281 msh4 msh4 orc4 orc4 msh5 msh5 slf1 slf1 fen1 fen1 fsbp fsbp gins4 gins4 usp9x usp9x mcm4 mcm4 mcm8 mcm8 rpa1 rpa1 rfc3 rfc3 LOC108248076 LOC108248076 gins3 gins3 orc1 orc1 gmnn gmnn ENSKMAP00000009313 ENSKMAP00000009313 tp53bp1 tp53bp1 chtf18 chtf18 Rad9b Rad9b LOC108240516 LOC108240516 LOC108248126 LOC108248126 pold4 pold4 brca2 brca2 LOC108229664 LOC108229664 poli poli mcmbp mcmbp MCMDC2 MCMDC2 orc3 orc3 pms2 pms2 rfc2 rfc2 mlh1 mlh1 mcm6 mcm6 ENSKMAP00000011592 ENSKMAP00000011592 gen1 gen1 recql5 recql5 mre11 mre11 pole3 pole3 mdc1 mdc1 fancm fancm mcm10 mcm10 recql4 recql4 MPHOSPH9 MPHOSPH9 rad50 rad50 rad54l rad54l pold1 pold1 gins2 gins2 hus1 hus1 LOC108228223 LOC108228223 pole2 pole2 orc5 orc5 rad52 rad52 rfc4 rfc4 rad9a rad9a rhno1 rhno1 msh2 msh2 polk polk ENSKMAP00000016201 ENSKMAP00000016201 ENSKMAP00000016230 ENSKMAP00000016230 prim1 prim1 mcm5 mcm5 rad51 rad51 rad51d rad51d rpa2 rpa2 exo1 exo1 tipin tipin mcm2 mcm2 rad1 rad1 cdt1 cdt1 rad51c rad51c rpa3 rpa3 pola1 pola1 RAD23B RAD23B bivm bivm Pole Pole ENSKMAP00000020750 ENSKMAP00000020750 top3a top3a cdca7 cdca7 rev3l rev3l xrcc2 xrcc2 msh6 msh6 timeless timeless LOC108246065 LOC108246065 blm blm pold3 pold3 exd2 exd2 topbp1 topbp1 lig1 lig1 rad17 rad17 wdr76 wdr76 Rbbp8 Rbbp8 LOC108246237 LOC108246237 brca1 brca1 dscc1 dscc1 pola2 pola2 prim2 prim2 CLSPN CLSPN polh polh mcm7 mcm7 mcph1 mcph1 rmi2 rmi2 orc2 orc2 mcm3 mcm3 ercc6 ercc6 atrip atrip DNA2 DNA2 wdhd1 wdhd1 xpa xpa bard1 bard1 rmi1 rmi1 atad5 atad5 fbh1 fbh1 tdrd3 tdrd3 dmc1 dmc1 ercc5 ercc5 chek1 chek1 pole4 pole4 LOC108230590 LOC108230590
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfc1Replication factor C subunit 1. (1180 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
ENSKMAP00000000467TAN domain-containing protein. (123 aa)
AtmUncharacterized protein. (130 aa)
ENSKMAP00000001053Uncharacterized protein. (109 aa)
rev1REV1 DNA directed polymerase. (1363 aa)
rfc5Replication factor C (activator 1) 5. (339 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (343 aa)
CDCA7Lzf-4CXXC_R1 domain-containing protein. (406 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (858 aa)
cdc7Cell division cycle 7 homolog (S. cerevisiae). (547 aa)
msh3MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR). (972 aa)
mus81MUS81 structure-specific endonuclease subunit. (556 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (196 aa)
xpcXeroderma pigmentosum, complementation group C. (935 aa)
mlh3MutL homolog 3 (E. coli). (1121 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
brip1BRCA1 interacting protein C-terminal helicase 1. (1177 aa)
LOC108244487Zgc:110269. (346 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (572 aa)
nbnNibrin. (832 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (136 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (575 aa)
dbf4DBF4 zinc finger. (606 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
mcm9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1140 aa)
ENSKMAP00000005281Uncharacterized protein. (165 aa)
msh4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (866 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (434 aa)
msh5MutS homolog 5. (654 aa)
slf1SMC5-SMC6 complex localization factor 1. (879 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
fsbpRAD54 homolog B. (845 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
usp9xUbiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2514 aa)
mcm4DNA helicase; Belongs to the MCM family. (861 aa)
mcm8Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (781 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC108248076Checkpoint kinase 2. (534 aa)
gins3GINS complex subunit 3. (211 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (695 aa)
gmnnGeminin DNA replication inhibitor. (224 aa)
ENSKMAP00000009313Methionine sulfoxide reductase B1b. (467 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1702 aa)
chtf18CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (775 aa)
Rad9bRAD9 checkpoint clamp component B. (194 aa)
LOC108240516Centrin, EF-hand protein, 2. (177 aa)
LOC108248126RPA_C domain-containing protein. (199 aa)
pold4Uncharacterized protein. (110 aa)
brca2BRCA2 DNA repair associated. (2641 aa)
LOC108229664PMS1 homolog 1, mismatch repair system component. (568 aa)
poliPolymerase (DNA directed) iota. (716 aa)
mcmbpMinichromosome maintenance complex binding protein. (587 aa)
MCMDC2Minichromosome maintenance domain containing 2. (637 aa)
orc3Origin recognition complex, subunit 3. (718 aa)
pms2PMS1 homolog 2, mismatch repair system component. (857 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (726 aa)
mcm6DNA helicase; Belongs to the MCM family. (823 aa)
ENSKMAP00000011592Uncharacterized protein. (216 aa)
gen1Chromo_2 domain-containing protein. (574 aa)
recql5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (996 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (696 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (153 aa)
mdc1Uncharacterized protein. (1989 aa)
fancmHelicase C-terminal domain-containing protein. (1616 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (848 aa)
recql4RecQ helicase-like 4. (1281 aa)
MPHOSPH9Uncharacterized protein. (1272 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
rad54lRAD54 like. (739 aa)
pold1DNA polymerase. (1105 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (207 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
LOC108228223Upstream binding transcription factor, like. (695 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
orc5Origin recognition complex, subunit 5. (445 aa)
rad52RAD52 homolog, DNA repair protein. (382 aa)
rfc4Replication factor C (activator 1) 4. (388 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (387 aa)
rhno1Si:ch73-352p4.5. (290 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
polkPolymerase (DNA directed) kappa. (401 aa)
ENSKMAP00000016201Uncharacterized protein. (303 aa)
ENSKMAP00000016230Piezo_RRas_bdg domain-containing protein. (318 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (427 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (334 aa)
rad51dRAD51 paralog D. (333 aa)
rpa2RPA_C domain-containing protein. (274 aa)
exo1Exonuclease 1. (769 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (270 aa)
mcm2DNA helicase; Belongs to the MCM family. (890 aa)
rad1RAD1 homolog (S. pombe). (280 aa)
cdt1Chromatin licensing and DNA replication factor 1. (642 aa)
rad51cRAD51 paralog C. (342 aa)
rpa3Replication protein A 14kDa subunit. (122 aa)
pola1DNA polymerase. (1476 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (396 aa)
bivmBasic, immunoglobulin-like variable motif containing. (481 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (298 aa)
ENSKMAP00000020750DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (314 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1023 aa)
cdca7Cell division cycle associated 7a. (404 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2448 aa)
xrcc2RECA_2 domain-containing protein. (357 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1388 aa)
timelessTimeless circadian clock. (1247 aa)
LOC108246065Cell division cycle 25B. (528 aa)
blmBLM RecQ like helicase. (1384 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
exd2Exonuclease 3'-5' domain containing 2. (639 aa)
topbp1DNA topoisomerase II binding protein 1. (1510 aa)
lig1DNA ligase. (1010 aa)
rad17RAD17 checkpoint clamp loader component. (528 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (575 aa)
Rbbp8SAE2 domain-containing protein. (82 aa)
LOC108246237DBF4-type domain-containing protein. (741 aa)
brca1Uncharacterized protein. (1354 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (602 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (516 aa)
CLSPNClaspin. (1213 aa)
polhPolymerase (DNA directed), eta. (738 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
mcph1Microcephalin 1. (817 aa)
rmi2RecQ mediated genome instability 2. (145 aa)
orc2Origin recognition complex, subunit 2. (585 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
ercc6Excision repair cross-complementation group 6. (1442 aa)
atripUncharacterized protein. (776 aa)
DNA2DNA replication helicase/nuclease 2. (1388 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (954 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
bard1BRCA1 associated RING domain 1. (802 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (699 aa)
atad5ATPase family AAA domain containing 5a. (1804 aa)
fbh1F-box DNA helicase 1. (1108 aa)
tdrd3Tudor domain containing 3. (787 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (334 aa)
ercc5Excision repair cross-complementation group 5. (1028 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (455 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (130 aa)
LOC108230590SCY domain-containing protein. (122 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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