STRINGSTRING
rfc1 rfc1 RPA1 RPA1 ENSKMAP00000000467 ENSKMAP00000000467 Atm Atm ENSKMAP00000001053 ENSKMAP00000001053 rev1 rev1 rfc5 rfc5 xrcc3 xrcc3 CDCA7L CDCA7L top3b top3b mus81 mus81 pold2 pold2 pcna pcna brip1 brip1 LOC108244487 LOC108244487 nbn nbn chtf8 chtf8 mad2l2 mad2l2 slf1 slf1 fen1 fen1 rpa1 rpa1 rfc3 rfc3 LOC108248076 LOC108248076 ENSKMAP00000009313 ENSKMAP00000009313 tp53bp1 tp53bp1 chtf18 chtf18 Rad9b Rad9b LOC108248126 LOC108248126 pold4 pold4 brca2 brca2 poli poli rfc2 rfc2 recql5 recql5 mre11 mre11 mdc1 mdc1 fancm fancm recql4 recql4 rad50 rad50 pold1 pold1 hus1 hus1 rad52 rad52 rfc4 rfc4 rad9a rad9a rhno1 rhno1 polk polk rad51 rad51 rad51d rad51d rpa2 rpa2 rad1 rad1 rad51c rad51c rpa3 rpa3 top3a top3a cdca7 cdca7 rev3l rev3l xrcc2 xrcc2 LOC108246065 LOC108246065 blm blm pold3 pold3 exd2 exd2 topbp1 topbp1 lig1 lig1 rad17 rad17 Rbbp8 Rbbp8 brca1 brca1 dscc1 dscc1 CLSPN CLSPN polh polh mcph1 mcph1 rmi2 rmi2 atrip atrip DNA2 DNA2 bard1 bard1 rmi1 rmi1 atad5 atad5 fbh1 fbh1 tdrd3 tdrd3 dmc1 dmc1 chek1 chek1 LOC108230590 LOC108230590
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfc1Replication factor C subunit 1. (1180 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
ENSKMAP00000000467TAN domain-containing protein. (123 aa)
AtmUncharacterized protein. (130 aa)
ENSKMAP00000001053Uncharacterized protein. (109 aa)
rev1REV1 DNA directed polymerase. (1363 aa)
rfc5Replication factor C (activator 1) 5. (339 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (343 aa)
CDCA7Lzf-4CXXC_R1 domain-containing protein. (406 aa)
top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (858 aa)
mus81MUS81 structure-specific endonuclease subunit. (556 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
brip1BRCA1 interacting protein C-terminal helicase 1. (1177 aa)
LOC108244487Zgc:110269. (346 aa)
nbnNibrin. (832 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (136 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
slf1SMC5-SMC6 complex localization factor 1. (879 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC108248076Checkpoint kinase 2. (534 aa)
ENSKMAP00000009313Methionine sulfoxide reductase B1b. (467 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1702 aa)
chtf18CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (775 aa)
Rad9bRAD9 checkpoint clamp component B. (194 aa)
LOC108248126RPA_C domain-containing protein. (199 aa)
pold4Uncharacterized protein. (110 aa)
brca2BRCA2 DNA repair associated. (2641 aa)
poliPolymerase (DNA directed) iota. (716 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
recql5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (996 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (696 aa)
mdc1Uncharacterized protein. (1989 aa)
fancmHelicase C-terminal domain-containing protein. (1616 aa)
recql4RecQ helicase-like 4. (1281 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
pold1DNA polymerase. (1105 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
rad52RAD52 homolog, DNA repair protein. (382 aa)
rfc4Replication factor C (activator 1) 4. (388 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (387 aa)
rhno1Si:ch73-352p4.5. (290 aa)
polkPolymerase (DNA directed) kappa. (401 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (334 aa)
rad51dRAD51 paralog D. (333 aa)
rpa2RPA_C domain-containing protein. (274 aa)
rad1RAD1 homolog (S. pombe). (280 aa)
rad51cRAD51 paralog C. (342 aa)
rpa3Replication protein A 14kDa subunit. (122 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1023 aa)
cdca7Cell division cycle associated 7a. (404 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2448 aa)
xrcc2RECA_2 domain-containing protein. (357 aa)
LOC108246065Cell division cycle 25B. (528 aa)
blmBLM RecQ like helicase. (1384 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
exd2Exonuclease 3'-5' domain containing 2. (639 aa)
topbp1DNA topoisomerase II binding protein 1. (1510 aa)
lig1DNA ligase. (1010 aa)
rad17RAD17 checkpoint clamp loader component. (528 aa)
Rbbp8SAE2 domain-containing protein. (82 aa)
brca1Uncharacterized protein. (1354 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
CLSPNClaspin. (1213 aa)
polhPolymerase (DNA directed), eta. (738 aa)
mcph1Microcephalin 1. (817 aa)
rmi2RecQ mediated genome instability 2. (145 aa)
atripUncharacterized protein. (776 aa)
DNA2DNA replication helicase/nuclease 2. (1388 aa)
bard1BRCA1 associated RING domain 1. (802 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (699 aa)
atad5ATPase family AAA domain containing 5a. (1804 aa)
fbh1F-box DNA helicase 1. (1108 aa)
tdrd3Tudor domain containing 3. (787 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (334 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (455 aa)
LOC108230590SCY domain-containing protein. (122 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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