21 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rcor3	REST corepressor 3. (561 aa)
	gatad2b	GATA zinc finger domain containing 2B. (658 aa)
	LOC108230843	Methyl-CpG binding domain protein 3a. (297 aa)
	hmg20b	High mobility group 20B. (294 aa)
	gatad2a	GATA zinc finger domain containing 2Ab. (639 aa)
	LOC108239526	Uncharacterized protein. (749 aa)
	mta2	Metastasis associated 1 family, member 2. (665 aa)
	LOC108251019	Methyl-CpG binding domain protein 2. (266 aa)
	LOC108239474	Uncharacterized protein. (243 aa)
	rest	RE1-silencing transcription factor. (996 aa)
	rcor2	REST corepressor 2. (549 aa)
	RCOR1	REST corepressor 1. (392 aa)
	LOC108235376	Uncharacterized protein. (1969 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (837 aa)
	hmg20a	High mobility group 20A. (291 aa)
	mta3	Metastasis associated 1 family, member 3. (700 aa)
	mta1	Metastasis associated 1. (619 aa)
	chd5	Uncharacterized protein. (1779 aa)
	LOC108242669	Chromodomain helicase DNA binding protein 4a. (1769 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (1811 aa)
	phf21a	PHD finger protein 21Ab. (554 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108230843	LOC108235376	ENSKMAP00000004457	ENSKMAP00000010565	Methyl-CpG binding domain protein 3a.	Uncharacterized protein.	0.741
LOC108230843	LOC108239526	ENSKMAP00000004457	ENSKMAP00000007794	Methyl-CpG binding domain protein 3a.	Uncharacterized protein.	0.699
LOC108230843	LOC108242669	ENSKMAP00000004457	ENSKMAP00000026097	Methyl-CpG binding domain protein 3a.	Chromodomain helicase DNA binding protein 4a.	0.741
LOC108230843	RCOR1	ENSKMAP00000004457	ENSKMAP00000010512	Methyl-CpG binding domain protein 3a.	REST corepressor 1.	0.477
LOC108230843	chd3	ENSKMAP00000004457	ENSKMAP00000026230	Methyl-CpG binding domain protein 3a.	Chromodomain helicase DNA binding protein 3.	0.741
LOC108230843	chd5	ENSKMAP00000004457	ENSKMAP00000024109	Methyl-CpG binding domain protein 3a.	Uncharacterized protein.	0.741
LOC108230843	gatad2a	ENSKMAP00000004457	ENSKMAP00000006684	Methyl-CpG binding domain protein 3a.	GATA zinc finger domain containing 2Ab.	0.699
LOC108230843	gatad2b	ENSKMAP00000004457	ENSKMAP00000001290	Methyl-CpG binding domain protein 3a.	GATA zinc finger domain containing 2B.	0.699
LOC108230843	hmg20b	ENSKMAP00000004457	ENSKMAP00000004751	Methyl-CpG binding domain protein 3a.	High mobility group 20B.	0.457
LOC108230843	kdm1a	ENSKMAP00000004457	ENSKMAP00000013386	Methyl-CpG binding domain protein 3a.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.617
LOC108230843	mta1	ENSKMAP00000004457	ENSKMAP00000017565	Methyl-CpG binding domain protein 3a.	Metastasis associated 1.	0.792
LOC108230843	mta2	ENSKMAP00000004457	ENSKMAP00000008038	Methyl-CpG binding domain protein 3a.	Metastasis associated 1 family, member 2.	0.861
LOC108230843	mta3	ENSKMAP00000004457	ENSKMAP00000015500	Methyl-CpG binding domain protein 3a.	Metastasis associated 1 family, member 3.	0.792
LOC108230843	phf21a	ENSKMAP00000004457	ENSKMAP00000028716	Methyl-CpG binding domain protein 3a.	PHD finger protein 21Ab.	0.660
LOC108230843	rcor2	ENSKMAP00000004457	ENSKMAP00000009251	Methyl-CpG binding domain protein 3a.	REST corepressor 2.	0.477
LOC108230843	rcor3	ENSKMAP00000004457	ENSKMAP00000000326	Methyl-CpG binding domain protein 3a.	REST corepressor 3.	0.477
LOC108230843	rest	ENSKMAP00000004457	ENSKMAP00000008915	Methyl-CpG binding domain protein 3a.	RE1-silencing transcription factor.	0.428
LOC108235376	LOC108230843	ENSKMAP00000010565	ENSKMAP00000004457	Uncharacterized protein.	Methyl-CpG binding domain protein 3a.	0.741
LOC108235376	LOC108239474	ENSKMAP00000010565	ENSKMAP00000008815	Uncharacterized protein.	Uncharacterized protein.	0.730
LOC108235376	LOC108239526	ENSKMAP00000010565	ENSKMAP00000007794	Uncharacterized protein.	Uncharacterized protein.	0.734