STRINGSTRING
RPA1 RPA1 pole4 pole4 chek1 chek1 haus5 haus5 ENSKMAP00000030004 ENSKMAP00000030004 nfrkb nfrkb dmap1 dmap1 smc2 smc2 dmc1 dmc1 syce2 syce2 wdhd1 wdhd1 smc4 smc4 smc3 smc3 ENSKMAP00000026824 ENSKMAP00000026824 ruvbl1 ruvbl1 slx4 slx4 CCNB1IP1 CCNB1IP1 mcm3 mcm3 BAZ1A BAZ1A ino80 ino80 orc2 orc2 sirt7 sirt7 mcm7 mcm7 ENSKMAP00000025497 ENSKMAP00000025497 LOC108238083 LOC108238083 prim2 prim2 pola2 pola2 brca1 brca1 setd5 setd5 psmc3ip psmc3ip Nek2 Nek2 ENSKMAP00000024065 ENSKMAP00000024065 lrwd1 lrwd1 sycp3 sycp3 topbp1 topbp1 LOC108239168 LOC108239168 pold3 pold3 blm blm mcrs1 mcrs1 timeless timeless ino80d ino80d ENSKMAP00000021195 ENSKMAP00000021195 cdca7 cdca7 ENSKMAP00000020750 ENSKMAP00000020750 Pole Pole LOC108244223 LOC108244223 phf12 phf12 pola1 pola1 rpa3 rpa3 cpsf6 cpsf6 sycp2 sycp2 smchd1 smchd1 sap130 sap130 rad1 rad1 ENSKMAP00000019407 ENSKMAP00000019407 ruvbl2 ruvbl2 LOC108229143 LOC108229143 mcm2 mcm2 tipin tipin ENSKMAP00000018800 ENSKMAP00000018800 spo11 spo11 zranb3 zranb3 rcc1 rcc1 pinx1 pinx1 rad51 rad51 mcm5 mcm5 actr5 actr5 prim1 prim1 uchl5 uchl5 smarcal1 smarcal1 swi5 swi5 rad9a rad9a actr8 actr8 Kmt2e Kmt2e ing3 ing3 orc5 orc5 pole2 pole2 LOC108229000 LOC108229000 LOC108247556 LOC108247556 prpf19 prpf19 hus1 hus1 gins2 gins2 pold1 pold1 Syce3 Syce3 rad50 rad50 mcm10 mcm10 ino80e ino80e LOC108239531 LOC108239531 pole3 pole3 tonsl tonsl mcm6 mcm6 mlh1 mlh1 orc3 orc3 znhit1 znhit1 Rrs1 Rrs1 trrap trrap LOC108251067 LOC108251067 brms1l brms1l brca2 brca2 actr6 actr6 pold4 pold4 brms1 brms1 Rad9b Rad9b orc1 orc1 ncaph ncaph atrx atrx LOC108240254 LOC108240254 gins3 gins3 sinhcaf sinhcaf hmga2 hmga2 LOC108247429 LOC108247429 LOC108242278 LOC108242278 rpa1 rpa1 ino80c ino80c ENSKMAP00000007253 ENSKMAP00000007253 SPIDR SPIDR smc1a smc1a mcm4 mcm4 gins4 gins4 nol6 nol6 tfpt tfpt LOC108250642 LOC108250642 orc4 orc4 srcap srcap msh4 msh4 LOC108231751 LOC108231751 LOC108242792 LOC108242792 cdc45 cdc45 lrpprc lrpprc tex11 tex11 pold2 pold2 mlh3 mlh3 rsph1 rsph1 gins1 gins1 mms22l mms22l LOC108234793 LOC108234793 wapl wapl suds3 suds3 CDCA7L CDCA7L LOC108250252 LOC108250252 nufip1 nufip1 LOC108243912 LOC108243912 ncapg ncapg
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (130 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (455 aa)
haus5SIN3 transcription regulator family member B. (1260 aa)
ENSKMAP00000030004Uncharacterized protein. (80 aa)
nfrkbNuclear factor related to kappaB binding protein. (1278 aa)
dmap1DNA methyltransferase 1 associated protein 1. (483 aa)
smc2Structural maintenance of chromosomes protein. (1200 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (334 aa)
syce2Uncharacterized protein. (152 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (954 aa)
smc4Structural maintenance of chromosomes protein. (1255 aa)
smc3Structural maintenance of chromosomes protein. (1218 aa)
ENSKMAP00000026824E1A binding protein p400. (1515 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
slx4SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1695 aa)
CCNB1IP1Cyclin B1 interacting protein 1. (311 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
BAZ1ABromodomain adjacent to zinc finger domain 1A. (1068 aa)
ino80INO80 complex ATPase subunit. (1474 aa)
orc2Origin recognition complex, subunit 2. (585 aa)
sirt7Sirtuin 7. (406 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
ENSKMAP00000025497Peptidylprolyl isomerase. (217 aa)
LOC108238083H2A histone family, member Y; Belongs to the histone H2A family. (369 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (516 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (602 aa)
brca1Uncharacterized protein. (1354 aa)
setd5SET domain containing 5. (1429 aa)
psmc3ipPSMC3 interacting protein. (212 aa)
Nek2NIMA-related kinase 2. (492 aa)
ENSKMAP00000024065Helicase ATP-binding domain-containing protein. (279 aa)
lrwd1Leucine-rich repeats and WD repeat domain containing 1. (730 aa)
sycp3Synaptonemal complex protein 3. (236 aa)
topbp1DNA topoisomerase II binding protein 1. (1510 aa)
LOC108239168Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (370 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
blmBLM RecQ like helicase. (1384 aa)
mcrs1Microspherule protein 1. (466 aa)
timelessTimeless circadian clock. (1247 aa)
ino80dINO80 complex subunit Da. (1000 aa)
ENSKMAP00000021195Si:dkey-40g16.5. (134 aa)
cdca7Cell division cycle associated 7a. (404 aa)
ENSKMAP00000020750DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (314 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (298 aa)
LOC108244223Structural maintenance of chromosomes 1B. (1046 aa)
phf12PHD finger protein 12b. (975 aa)
pola1DNA polymerase. (1476 aa)
rpa3Replication protein A 14kDa subunit. (122 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (582 aa)
sycp2Uncharacterized protein. (1035 aa)
smchd1Structural maintenance of chromosomes flexible hinge domain containing 1. (1800 aa)
sap130Sin3A-associated protein a. (1047 aa)
rad1RAD1 homolog (S. pombe). (280 aa)
ENSKMAP00000019407Uncharacterized protein. (95 aa)
ruvbl2RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (459 aa)
LOC108229143SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (368 aa)
mcm2DNA helicase; Belongs to the MCM family. (890 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (270 aa)
ENSKMAP00000018800Uncharacterized protein. (523 aa)
spo11SPO11 initiator of meiotic double stranded breaks. (374 aa)
zranb3Zinc finger, RAN-binding domain containing 3. (984 aa)
rcc1Regulator of chromosome condensation 1. (420 aa)
pinx1PIN2 (TERF1) interacting telomerase inhibitor 1. (364 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (334 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
actr5Actin related protein 5; Belongs to the actin family. (642 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (427 aa)
uchl5Ubiquitin carboxyl-terminal hydrolase. (329 aa)
smarcal1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (868 aa)
swi5SWI5 homologous recombination repair protein. (136 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (387 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (643 aa)
Kmt2eLysine (K)-specific methyltransferase 2E. (430 aa)
ing3Inhibitor of growth protein. (418 aa)
orc5Origin recognition complex, subunit 5. (445 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
LOC108229000Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E. (249 aa)
LOC108247556Kinesin-associated protein 3a. (780 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (207 aa)
pold1DNA polymerase. (1105 aa)
Syce3Uncharacterized protein. (83 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (848 aa)
ino80eINO80 complex subunit E. (250 aa)
LOC108239531Kinesin-associated protein 3b. (777 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (153 aa)
tonslTonsoku-like, DNA repair protein. (1413 aa)
mcm6DNA helicase; Belongs to the MCM family. (823 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (726 aa)
orc3Origin recognition complex, subunit 3. (718 aa)
znhit1Zinc finger, HIT-type containing 1. (156 aa)
Rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (339 aa)
trrapTransformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (3820 aa)
LOC108251067SIN3 transcription regulator family member Aa. (1262 aa)
brms1lUncharacterized protein. (251 aa)
brca2BRCA2 DNA repair associated. (2641 aa)
actr6Actin related protein 6; Belongs to the actin family. (295 aa)
pold4Uncharacterized protein. (110 aa)
brms1BRMS1 transcriptional repressor and anoikis regulator. (277 aa)
Rad9bRAD9 checkpoint clamp component B. (194 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (695 aa)
ncaphCondensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (692 aa)
atrxATRX chromatin remodeler. (2228 aa)
LOC108240254Uncharacterized protein. (137 aa)
gins3GINS complex subunit 3. (211 aa)
sinhcafSIN3-HDAC complex associated factor. (338 aa)
hmga2Uncharacterized protein. (115 aa)
LOC108247429Uncharacterized protein. (1905 aa)
LOC108242278Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (261 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
ino80cINO80 complex subunit C. (207 aa)
ENSKMAP00000007253HORMA domain-containing protein. (90 aa)
SPIDRScaffold protein involved in DNA repair. (938 aa)
smc1aStructural maintenance of chromosomes protein. (1231 aa)
mcm4DNA helicase; Belongs to the MCM family. (861 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
nol6Nucleolar protein 6. (1150 aa)
tfptTCF3 (E2A) fusion partner. (197 aa)
LOC108250642SIN3-HDAC complex associated factor, like. (224 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (434 aa)
srcapSnf2-related CREBBP activator protein. (2762 aa)
msh4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (866 aa)
LOC108231751BRMS1 like transcriptional repressor b. (324 aa)
LOC108242792SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (373 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (572 aa)
lrpprcLeucine-rich pentatricopeptide repeat containing. (1644 aa)
tex11Testis expressed 11. (806 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
mlh3MutL homolog 3 (E. coli). (1121 aa)
rsph1Uncharacterized protein. (217 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (196 aa)
mms22lMMS22-like, DNA repair protein. (1212 aa)
LOC108234793SIN3 transcription regulator family member Ab. (1289 aa)
waplWAPL cohesin release factor a. (1187 aa)
suds3SDS3 homolog, SIN3A corepressor complex component. (352 aa)
CDCA7Lzf-4CXXC_R1 domain-containing protein. (406 aa)
LOC108250252WAPL cohesin release factor b. (1220 aa)
nufip1C2H2-type domain-containing protein. (561 aa)
LOC108243912Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E. (247 aa)
ncapgNon-SMC condensin I complex, subunit G. (1016 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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