26 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	utp25	UTP25 small subunit processor component. (824 aa)
	Heatr1	BP28CT domain-containing protein. (356 aa)
	Rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (339 aa)
	tsr1	TSR1 ribosome maturation factor. (833 aa)
	utp3	UTP3 small subunit processome component. (478 aa)
	dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1153 aa)
	utp4	UTP4 small subunit processome component. (688 aa)
	nol10	Nucleolar protein 10. (672 aa)
	LOC108250319	PWP2 small subunit processome component. (909 aa)
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	utp23	UTP23 small subunit processome component. (259 aa)
	mrps11	Mitochondrial ribosomal protein S11. (197 aa)
	fam207a	Family with sequence similarity 207 member A. (250 aa)
	kri1	KRI1 homolog. (767 aa)
	tsr2	Uncharacterized protein. (175 aa)
	tbl3	Transducin (beta)-like 3. (898 aa)
	nop9	PUM-HD domain-containing protein. (614 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	bysl	Bystin-like. (439 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	abt1	Activator of basal transcription 1. (267 aa)
	wdr46	WD repeat domain 46. (595 aa)
	wdr43	WD repeat domain 43. (652 aa)
	bms1	BMS1 ribosome biogenesis factor. (791 aa)
	ngdn	Neuroguidin, EIF4E binding protein. (325 aa)
	rpp40	Ribonuclease P/MRP 40 subunit. (349 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Heatr1	LOC108250319	ENSKMAP00000011271	ENSKMAP00000004184	BP28CT domain-containing protein.	PWP2 small subunit processome component.	0.999
Heatr1	Rrs1	ENSKMAP00000011271	ENSKMAP00000010974	BP28CT domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.432
Heatr1	abt1	ENSKMAP00000011271	ENSKMAP00000019723	BP28CT domain-containing protein.	Activator of basal transcription 1.	0.600
Heatr1	bms1	ENSKMAP00000011271	ENSKMAP00000029707	BP28CT domain-containing protein.	BMS1 ribosome biogenesis factor.	0.999
Heatr1	bysl	ENSKMAP00000011271	ENSKMAP00000028918	BP28CT domain-containing protein.	Bystin-like.	0.996
Heatr1	dcaf13	ENSKMAP00000011271	ENSKMAP00000003116	BP28CT domain-containing protein.	Ddb1 and cul4 associated factor 13.	0.996
Heatr1	dhx37	ENSKMAP00000011271	ENSKMAP00000004707	BP28CT domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 37.	0.846
Heatr1	kri1	ENSKMAP00000011271	ENSKMAP00000016228	BP28CT domain-containing protein.	KRI1 homolog.	0.451
Heatr1	mrps11	ENSKMAP00000011271	ENSKMAP00000001106	BP28CT domain-containing protein.	Mitochondrial ribosomal protein S11.	0.901
Heatr1	ngdn	ENSKMAP00000011271	ENSKMAP00000025254	BP28CT domain-containing protein.	Neuroguidin, EIF4E binding protein.	0.994
Heatr1	nol10	ENSKMAP00000011271	ENSKMAP00000004562	BP28CT domain-containing protein.	Nucleolar protein 10.	0.986
Heatr1	nop9	ENSKMAP00000011271	ENSKMAP00000027762	BP28CT domain-containing protein.	PUM-HD domain-containing protein.	0.659
Heatr1	tbl3	ENSKMAP00000011271	ENSKMAP00000027162	BP28CT domain-containing protein.	Transducin (beta)-like 3.	0.999
Heatr1	tsr1	ENSKMAP00000011271	ENSKMAP00000007716	BP28CT domain-containing protein.	TSR1 ribosome maturation factor.	0.944
Heatr1	utp25	ENSKMAP00000011271	ENSKMAP00000011660	BP28CT domain-containing protein.	UTP25 small subunit processor component.	0.897
Heatr1	utp3	ENSKMAP00000011271	ENSKMAP00000006431	BP28CT domain-containing protein.	UTP3 small subunit processome component.	0.997
Heatr1	utp4	ENSKMAP00000011271	ENSKMAP00000004705	BP28CT domain-containing protein.	UTP4 small subunit processome component.	0.999
Heatr1	utp6	ENSKMAP00000011271	ENSKMAP00000029179	BP28CT domain-containing protein.	UTP6 small subunit processome component.	0.999
Heatr1	wdr43	ENSKMAP00000011271	ENSKMAP00000012381	BP28CT domain-containing protein.	WD repeat domain 43.	0.999
Heatr1	wdr46	ENSKMAP00000011271	ENSKMAP00000020783	BP28CT domain-containing protein.	WD repeat domain 46.	0.999