STRINGSTRING
smarcal1 smarcal1 ercc5 ercc5 smc2 smc2 dmc1 dmc1 ercc4 ercc4 LOC108237534 LOC108237534 fbh1 fbh1 stn1 stn1 LOC108241559 LOC108241559 top1 top1 rad18 rad18 ercc1 ercc1 smc4 smc4 ighmbp2 ighmbp2 LOC108244389 LOC108244389 mcm3 mcm3 wdr48 wdr48 dhx36 dhx36 mcm7 mcm7 terf2 terf2 LOC108235131 LOC108235131 LOC108235292 LOC108235292 nabp1 nabp1 ENSKMAP00000024065 ENSKMAP00000024065 Rbbp8 Rbbp8 LOC108231059 LOC108231059 blm blm sprtn sprtn rtf1 rtf1 LOC108251266 LOC108251266 top3a top3a bivm bivm rexo4 rexo4 pola1 pola1 rpa3 rpa3 mcm2 mcm2 ssbp1 ssbp1 zranb3 zranb3 rad51d rad51d LOC108235069 LOC108235069 rad51 rad51 mcm5 mcm5 msh2 msh2 ssbp2 ssbp2 ten1 ten1 rad52 rad52 recql recql nup35 nup35 polr2g polr2g hrob hrob LOC108236679 LOC108236679 rad50 rad50 recql4 recql4 mcm10 mcm10 lonp1 lonp1 mcm6 mcm6 polr2h polr2h ENSKMAP00000010500 ENSKMAP00000010500 brca2 brca2 swsap1 swsap1 terf1 terf1 ENSKMAP00000009313 ENSKMAP00000009313 twnk twnk hmces hmces tdp2 tdp2 pot1 pot1 rpa1 rpa1 radx radx mcm8 mcm8 ctc1 ctc1 mcm4 mcm4 tsn tsn mcm9 mcm9 cdc45 cdc45 lrpprc lrpprc LOC108230802 LOC108230802 xpc xpc mms22l mms22l LOC108228663 LOC108228663 LOC108230815 LOC108230815 polr3c polr3c tdp1 tdp1 RPA1 RPA1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smarcal1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (868 aa)
ercc5Excision repair cross-complementation group 5. (1028 aa)
smc2Structural maintenance of chromosomes protein. (1200 aa)
dmc1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (334 aa)
ercc4Excision repair cross-complementation group 4. (899 aa)
LOC108237534DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (746 aa)
fbh1F-box DNA helicase 1. (1108 aa)
stn1STN1 subunit of CST complex. (315 aa)
LOC108241559Uncharacterized protein. (560 aa)
top1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (748 aa)
rad18RAD18 E3 ubiquitin protein ligase. (490 aa)
ercc1Excision repair cross-complementation group 1. (352 aa)
smc4Structural maintenance of chromosomes protein. (1255 aa)
ighmbp2Immunoglobulin mu DNA binding protein 2. (978 aa)
LOC108244389SET domain and mariner transposase fusion gene. (287 aa)
mcm3DNA helicase; Belongs to the MCM family. (815 aa)
wdr48WD repeat domain 48b. (677 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1105 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
terf2HTH myb-type domain-containing protein. (603 aa)
LOC108235131SAM domain and HD domain 1. (624 aa)
LOC108235292DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (767 aa)
nabp1Nucleic acid binding protein 1a. (219 aa)
ENSKMAP00000024065Helicase ATP-binding domain-containing protein. (279 aa)
Rbbp8SAE2 domain-containing protein. (82 aa)
LOC108231059Far upstream element (FUSE) binding protein 3. (527 aa)
blmBLM RecQ like helicase. (1384 aa)
sprtnSprT-like N-terminal domain. (569 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
LOC108251266Endo/exonuclease/phosphatase domain-containing protein. (311 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1023 aa)
bivmBasic, immunoglobulin-like variable motif containing. (481 aa)
rexo4REX4 homolog, 3'-5' exonuclease. (415 aa)
pola1DNA polymerase. (1476 aa)
rpa3Replication protein A 14kDa subunit. (122 aa)
mcm2DNA helicase; Belongs to the MCM family. (890 aa)
ssbp1Single-stranded DNA binding protein 1. (146 aa)
zranb3Zinc finger, RAN-binding domain containing 3. (984 aa)
rad51dRAD51 paralog D. (333 aa)
LOC108235069LisH domain-containing protein. (383 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (334 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
ssbp2Si:ch211-130m23.3. (374 aa)
ten1TEN1 subunit of CST complex. (135 aa)
rad52RAD52 homolog, DNA repair protein. (382 aa)
recqlATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (820 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (297 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
hrobSi:dkey-260c8.8. (670 aa)
LOC108236679Nei-like DNA glycosylase 3. (556 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
recql4RecQ helicase-like 4. (1281 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (848 aa)
lonp1Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (998 aa)
mcm6DNA helicase; Belongs to the MCM family. (823 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSKMAP00000010500Uncharacterized protein. (850 aa)
brca2BRCA2 DNA repair associated. (2641 aa)
swsap1SWIM-type zinc finger 7 associated protein 1. (278 aa)
terf1Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (366 aa)
ENSKMAP00000009313Methionine sulfoxide reductase B1b. (467 aa)
twnkTwinkle mtDNA helicase. (717 aa)
hmcesAbasic site processing protein HMCES; Sensor of abasic sites in single-stranded DNA (ssDNA) required to preserve genome integrity by promoting error-free repair of abasic sites. Acts as an enzyme that recognizes and binds abasic sites in ssDNA at replication forks and chemically modifies the lesion by forming a covalent cross-link with DNA. The HMCES DNA-protein cross- link is then degraded by the proteasome. Promotes error-free repair of abasic sites by acting as a 'suicide' enzyme that is degraded, thereby protecting abasic sites from translesion synthesis (TLS) polymerases and endon [...] (365 aa)
tdp2Tyrosyl-DNA phosphodiesterase 2b. (360 aa)
pot1Protection of telomeres 1 homolog. (770 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
radxRPA1 related single stranded DNA binding protein. (771 aa)
mcm8Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (781 aa)
ctc1Uncharacterized protein. (993 aa)
mcm4DNA helicase; Belongs to the MCM family. (861 aa)
tsnTranslin. (227 aa)
mcm9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1140 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (572 aa)
lrpprcLeucine-rich pentatricopeptide repeat containing. (1644 aa)
LOC108230802Single stranded DNA binding protein 4. (385 aa)
xpcXeroderma pigmentosum, complementation group C. (935 aa)
mms22lMMS22-like, DNA repair protein. (1212 aa)
LOC108228663Myelin expression factor 2. (566 aa)
LOC108230815Single stranded DNA binding protein 3b. (390 aa)
polr3cRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (545 aa)
tdp1Tyrosyl-DNA phosphodiesterase 1. (609 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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