STRINGSTRING
Prkn Prkn ENSKMAP00000003164 ENSKMAP00000003164 rag1 rag1 ube3d ube3d PCGF3 PCGF3 LOC108230570 LOC108230570 cdc73 cdc73 pcgf5 pcgf5 huwe1 huwe1 ctr9 ctr9 LOC108239446 LOC108239446 LOC108244568 LOC108244568 LOC108244555 LOC108244555 ube2w ube2w uhrf1 uhrf1 marchf7 marchf7 pcgf1 pcgf1 kbtbd8 kbtbd8 LOC108242320 LOC108242320 UBE2O UBE2O rnf2 rnf2 rnf40 rnf40 klhl22 klhl22 fancg fancg RING1 RING1 ENSKMAP00000018989 ENSKMAP00000018989 wac wac rbx1 rbx1 pcgf2 pcgf2 pex12 pex12 LOC108228415 LOC108228415 bmi1 bmi1 fanca fanca znf598 znf598 cul1 cul1 ENSKMAP00000023965 ENSKMAP00000023965 pcgf6 pcgf6 fancb fancb KLHL12 KLHL12 dtl dtl fancl fancl LOC108249571 LOC108249571 mgrn1 mgrn1 trim37 trim37 ube2t ube2t CUL3 CUL3 rad18 rad18 rnf220 rnf220 fancf fancf obi1 obi1 LOC108230646 LOC108230646 ENSKMAP00000029942 ENSKMAP00000029942 LOC108230648 LOC108230648 ddb1 ddb1 LOC108247965 LOC108247965 LOC108239997 LOC108239997 tsg101 tsg101 LOC108240497 LOC108240497 Topors Topors
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PrknRBR-type E3 ubiquitin transferase. (174 aa)
ENSKMAP00000003164Ubiquitin-like domain-containing protein. (142 aa)
rag1V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] (1071 aa)
ube3dUbiquitin protein ligase E3D. (399 aa)
PCGF3Polycomb group ring finger 3. (249 aa)
LOC108230570RING-type domain-containing protein. (327 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
pcgf5Polycomb group ring finger 5a. (279 aa)
huwe1HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1. (4192 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1155 aa)
LOC108239446Ring finger protein 126. (313 aa)
LOC108244568RING-type domain-containing protein. (223 aa)
LOC108244555Zgc:66440. (369 aa)
ube2wUBIQUITIN_CONJUGAT_2 domain-containing protein. (169 aa)
uhrf1Ubiquitin-like with PHD and ring finger domains 1. (777 aa)
marchf7Membrane associated ring-CH-type finger 7. (769 aa)
pcgf1Polycomb group ring finger 1. (260 aa)
kbtbd8Kelch repeat and BTB (POZ) domain containing 8. (604 aa)
LOC108242320E3 ubiquitin protein ligase. (1020 aa)
UBE2OUbiquitin conjugating enzyme E2 O. (1271 aa)
rnf2Ring finger protein 2. (342 aa)
rnf40E3 ubiquitin protein ligase. (1005 aa)
klhl22Kelch-like family member 22. (630 aa)
fancgFA complementation group G. (600 aa)
RING1Ring finger protein 1. (406 aa)
ENSKMAP00000018989Uncharacterized protein. (152 aa)
wacWW domain containing adaptor with coiled-coil a. (593 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
pcgf2Polycomb group ring finger 2. (376 aa)
pex12Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (349 aa)
LOC108228415RING-type domain-containing protein. (844 aa)
bmi1Bmi1 polycomb ring finger oncogene 1a. (346 aa)
fancaFanconi_A_N domain-containing protein. (1475 aa)
znf598Zinc finger protein 598. (923 aa)
cul1Cullin 1b; Belongs to the cullin family. (776 aa)
ENSKMAP00000023965Uncharacterized protein. (240 aa)
pcgf6Polycomb group ring finger 6. (257 aa)
fancbFA complementation group B. (776 aa)
KLHL12Kelch like family member 12. (564 aa)
dtlDenticleless E3 ubiquitin protein ligase homolog (Drosophila). (621 aa)
fanclFA complementation group L. (371 aa)
LOC108249571Si:dkey-3h3.3. (421 aa)
mgrn1Mahogunin, ring finger 1b. (548 aa)
trim37Tripartite motif containing 37. (927 aa)
ube2tUbiquitin-conjugating enzyme E2T (putative). (194 aa)
CUL3Cullin 3; Belongs to the cullin family. (766 aa)
rad18RAD18 E3 ubiquitin protein ligase. (490 aa)
rnf220Ring finger protein 220a. (680 aa)
fancfFA complementation group F. (335 aa)
obi1ORC ubiquitin ligase 1. (581 aa)
LOC108230646RING-type domain-containing protein. (259 aa)
ENSKMAP00000029942Ring finger protein 220b. (284 aa)
LOC108230648BTB domain-containing protein. (521 aa)
ddb1Damage-specific DNA binding protein 1. (1075 aa)
LOC108247965WW domain-containing protein. (525 aa)
LOC108239997Zgc:123278. (184 aa)
tsg101Tumor susceptibility 101a. (390 aa)
LOC108240497CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
ToporsUncharacterized protein. (109 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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