18 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ercc8	Excision repair cross-complementation group 8. (401 aa)
	LOC108234481	Uncharacterized protein. (270 aa)
	brca2	BRCA2 DNA repair associated. (2641 aa)
	ENSKMAP00000000467	TAN domain-containing protein. (123 aa)
	blm	BLM RecQ like helicase. (1384 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (725 aa)
	ercc1	Excision repair cross-complementation group 1. (352 aa)
	Atm	Uncharacterized protein. (130 aa)
	lig4	DNA ligase. (922 aa)
	ercc6	Excision repair cross-complementation group 6. (1442 aa)
	xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6. (610 aa)
	kars1	Lysine--tRNA ligase. (610 aa)
	sfrp2	Secreted frizzled-related protein 2. (308 aa)
	xrcc4	X-ray repair complementing defective repair in Chinese hamster cells 4. (343 aa)
	tp53bp1	Tumor protein p53 binding protein, 1. (1702 aa)
	xrcc2	RECA_2 domain-containing protein. (357 aa)
	LOC108228374	FZ domain-containing protein. (285 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	ENSKMAP00000000467	ENSKMAP00000000507	ENSKMAP00000000467	Uncharacterized protein.	TAN domain-containing protein.	0.926
Atm	blm	ENSKMAP00000000507	ENSKMAP00000022385	Uncharacterized protein.	BLM RecQ like helicase.	0.875
Atm	brca2	ENSKMAP00000000507	ENSKMAP00000010397	Uncharacterized protein.	BRCA2 DNA repair associated.	0.831
Atm	ercc1	ENSKMAP00000000507	ENSKMAP00000027419	Uncharacterized protein.	Excision repair cross-complementation group 1.	0.594
Atm	lig4	ENSKMAP00000000507	ENSKMAP00000001469	Uncharacterized protein.	DNA ligase.	0.623
Atm	msh2	ENSKMAP00000000507	ENSKMAP00000015699	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.680
Atm	tp53bp1	ENSKMAP00000000507	ENSKMAP00000009403	Uncharacterized protein.	Tumor protein p53 binding protein, 1.	0.942
Atm	xrcc2	ENSKMAP00000000507	ENSKMAP00000021665	Uncharacterized protein.	RECA_2 domain-containing protein.	0.677
Atm	xrcc5	ENSKMAP00000000507	ENSKMAP00000015947	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.891
Atm	xrcc6	ENSKMAP00000000507	ENSKMAP00000002841	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.909
ENSKMAP00000000467	Atm	ENSKMAP00000000467	ENSKMAP00000000507	TAN domain-containing protein.	Uncharacterized protein.	0.926
ENSKMAP00000000467	blm	ENSKMAP00000000467	ENSKMAP00000022385	TAN domain-containing protein.	BLM RecQ like helicase.	0.875
ENSKMAP00000000467	brca2	ENSKMAP00000000467	ENSKMAP00000010397	TAN domain-containing protein.	BRCA2 DNA repair associated.	0.831
ENSKMAP00000000467	ercc1	ENSKMAP00000000467	ENSKMAP00000027419	TAN domain-containing protein.	Excision repair cross-complementation group 1.	0.594
ENSKMAP00000000467	lig4	ENSKMAP00000000467	ENSKMAP00000001469	TAN domain-containing protein.	DNA ligase.	0.623
ENSKMAP00000000467	msh2	ENSKMAP00000000467	ENSKMAP00000015699	TAN domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.680
ENSKMAP00000000467	tp53bp1	ENSKMAP00000000467	ENSKMAP00000009403	TAN domain-containing protein.	Tumor protein p53 binding protein, 1.	0.942
ENSKMAP00000000467	xrcc2	ENSKMAP00000000467	ENSKMAP00000021665	TAN domain-containing protein.	RECA_2 domain-containing protein.	0.677
ENSKMAP00000000467	xrcc5	ENSKMAP00000000467	ENSKMAP00000015947	TAN domain-containing protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.891
ENSKMAP00000000467	xrcc6	ENSKMAP00000000467	ENSKMAP00000002841	TAN domain-containing protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.909