STRINGSTRING
LOC108234096 LOC108234096 nrap nrap LOC108236365 LOC108236365 ctnnb1 ctnnb1 LOC108232297 LOC108232297 LOC108240485 LOC108240485 LOC108245667 LOC108245667 LOC108229593 LOC108229593 LOC108242922 LOC108242922 LOC108246957 LOC108246957 cxadr cxadr fermt2 fermt2 scn1b scn1b CDH2 CDH2 vcl vcl gja5 gja5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108234096Vinculin a. (1135 aa)
nrapNebulin-related anchoring protein. (1667 aa)
LOC108236365Junction plakoglobin a. (725 aa)
ctnnb1Catenin (cadherin-associated protein), beta 1. (783 aa)
LOC108232297FXYD domain-containing ion transport regulator; Belongs to the FXYD family. (88 aa)
LOC108240485Sodium channel, voltage-gated, type IV, beta a. (237 aa)
LOC108245667Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (388 aa)
LOC108229593Sodium channel, voltage-gated, type I, beta a. (214 aa)
LOC108242922Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (390 aa)
LOC108246957Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (913 aa)
cxadrCXADR Ig-like cell adhesion molecule. (375 aa)
fermt2Fermitin family member 2. (696 aa)
scn1bSodium channel, voltage-gated, type I, beta b. (226 aa)
CDH2Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (904 aa)
vclVinculin b. (1066 aa)
gja5Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (377 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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