22 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108239245	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	uba2	SUMO-activating enzyme subunit 2; The heterodimer acts as an E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2. Belongs to the ubiquitin-activating E1 family. (645 aa)
	znf451	Zinc finger protein 451. (874 aa)
	LOC108248345	Uncharacterized protein. (548 aa)
	LOC108236207	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	rangap1	RAN GTPase activating protein 1a. (553 aa)
	ifih1	Interferon induced with helicase C domain 1. (973 aa)
	LOC108240719	Small ubiquitin-related modifier. (94 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	LOC108232577	Small ubiquitin-related modifier. (94 aa)
	LOC108237844	Protein inhibitor of activated STAT, 1a. (698 aa)
	sumo1	Small ubiquitin-related modifier. (105 aa)
	mul1	Mitochondrial E3 ubiquitin protein ligase 1b. (352 aa)
	pias4	Protein inhibitor of activated STAT, 4a. (507 aa)
	LOC108242722	Small ubiquitin-related modifier. (96 aa)
	LOC108240408	RAN binding protein 2. (3043 aa)
	sae1	SUMO1 activating enzyme subunit 1. (345 aa)
	ENSKMAP00000028779	Zinc finger, MIZ-type containing 2. (338 aa)
	nsmce2	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (228 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	cbx4	Chromobox 4. (610 aa)
	LOC108229849	Protein inhibitor of activated STAT, 1b. (648 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000028779	LOC108232577	ENSKMAP00000028779	ENSKMAP00000016078	Zinc finger, MIZ-type containing 2.	Small ubiquitin-related modifier.	0.606
ENSKMAP00000028779	LOC108236207	ENSKMAP00000028779	ENSKMAP00000021963	Zinc finger, MIZ-type containing 2.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.723
ENSKMAP00000028779	LOC108240719	ENSKMAP00000028779	ENSKMAP00000016972	Zinc finger, MIZ-type containing 2.	Small ubiquitin-related modifier.	0.606
ENSKMAP00000028779	LOC108242722	ENSKMAP00000028779	ENSKMAP00000001814	Zinc finger, MIZ-type containing 2.	Small ubiquitin-related modifier.	0.606
ENSKMAP00000028779	nsmce2	ENSKMAP00000028779	ENSKMAP00000028416	Zinc finger, MIZ-type containing 2.	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	0.524
ENSKMAP00000028779	sumo1	ENSKMAP00000028779	ENSKMAP00000005306	Zinc finger, MIZ-type containing 2.	Small ubiquitin-related modifier.	0.606
ENSKMAP00000028779	sumo2	ENSKMAP00000028779	ENSKMAP00000028132	Zinc finger, MIZ-type containing 2.	Small ubiquitin-related modifier.	0.606
ENSKMAP00000028779	ube2i	ENSKMAP00000028779	ENSKMAP00000016252	Zinc finger, MIZ-type containing 2.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.723
LOC108229849	LOC108232577	ENSKMAP00000026827	ENSKMAP00000016078	Protein inhibitor of activated STAT, 1b.	Small ubiquitin-related modifier.	0.742
LOC108229849	LOC108236207	ENSKMAP00000026827	ENSKMAP00000021963	Protein inhibitor of activated STAT, 1b.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.799
LOC108229849	LOC108240719	ENSKMAP00000026827	ENSKMAP00000016972	Protein inhibitor of activated STAT, 1b.	Small ubiquitin-related modifier.	0.741
LOC108229849	LOC108242722	ENSKMAP00000026827	ENSKMAP00000001814	Protein inhibitor of activated STAT, 1b.	Small ubiquitin-related modifier.	0.852
LOC108229849	nsmce2	ENSKMAP00000026827	ENSKMAP00000028416	Protein inhibitor of activated STAT, 1b.	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	0.671
LOC108229849	sae1	ENSKMAP00000026827	ENSKMAP00000028827	Protein inhibitor of activated STAT, 1b.	SUMO1 activating enzyme subunit 1.	0.697
LOC108229849	sumo1	ENSKMAP00000026827	ENSKMAP00000005306	Protein inhibitor of activated STAT, 1b.	Small ubiquitin-related modifier.	0.951
LOC108229849	sumo2	ENSKMAP00000026827	ENSKMAP00000028132	Protein inhibitor of activated STAT, 1b.	Small ubiquitin-related modifier.	0.889
LOC108229849	uba2	ENSKMAP00000026827	ENSKMAP00000026296	Protein inhibitor of activated STAT, 1b.	SUMO-activating enzyme subunit 2; The heterodimer acts as an E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2. Belongs to the ubiquitin-activating E1 family.	0.697
LOC108229849	ube2i	ENSKMAP00000026827	ENSKMAP00000016252	Protein inhibitor of activated STAT, 1b.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.799
LOC108232577	ENSKMAP00000028779	ENSKMAP00000016078	ENSKMAP00000028779	Small ubiquitin-related modifier.	Zinc finger, MIZ-type containing 2.	0.606
LOC108232577	LOC108229849	ENSKMAP00000016078	ENSKMAP00000026827	Small ubiquitin-related modifier.	Protein inhibitor of activated STAT, 1b.	0.742