23 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108239540	Zgc:171558. (908 aa)
	LOC108249780	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family. (364 aa)
	LOC108250397	Endothelin 1. (163 aa)
	LOC108228735	Si:dkey-211g8.9. (267 aa)
	LOC108241647	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
	LOC108241711	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (256 aa)
	ENSKMAP00000004923	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (355 aa)
	cplx3	Complexin 3b. (156 aa)
	LOC108232947	Adenylate cyclase activating polypeptide 1b. (175 aa)
	hnf1b	HNF1 homeobox Ba. (568 aa)
	ccdc186	Si:ch211-225b10.4. (1018 aa)
	SLC16A2	Solute carrier family 16 member 2. (553 aa)
	LOC108243283	Vasoactive intestinal peptide. (152 aa)
	ENSKMAP00000022275	Uncharacterized protein. (1164 aa)
	smpd3	Sphingomyelin phosphodiesterase 3, neutral. (722 aa)
	LOC108247698	Sorting nexin 19b. (893 aa)
	rapgef4	Rap guanine nucleotide exchange factor (GEF) 4. (919 aa)
	ADCYAP1	Adenylate cyclase activating polypeptide 1a. (200 aa)
	PCLO	Piccolo presynaptic cytomatrix protein. (5008 aa)
	hnf1a	HNF1 homeobox a. (560 aa)
	park7	Parkinson protein 7. (189 aa)
	stxbp3	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (592 aa)
	LOC108245203	Sorting nexin 19a. (946 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCYAP1	LOC108232947	ENSKMAP00000019232	ENSKMAP00000001359	Adenylate cyclase activating polypeptide 1a.	Adenylate cyclase activating polypeptide 1b.	0.901
ENSKMAP00000004923	LOC108228735	ENSKMAP00000004923	ENSKMAP00000005482	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Si:dkey-211g8.9.	0.499
LOC108228735	ENSKMAP00000004923	ENSKMAP00000005482	ENSKMAP00000004923	Si:dkey-211g8.9.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.499
LOC108232947	ADCYAP1	ENSKMAP00000001359	ENSKMAP00000019232	Adenylate cyclase activating polypeptide 1b.	Adenylate cyclase activating polypeptide 1a.	0.901
LOC108249780	LOC108250397	ENSKMAP00000008566	ENSKMAP00000007254	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.465
LOC108250397	LOC108249780	ENSKMAP00000007254	ENSKMAP00000008566	Endothelin 1.	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family.	0.465