66 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fcf1	FCF1 rRNA-processing protein. (198 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (853 aa)
	bms1	BMS1 ribosome biogenesis factor. (791 aa)
	rsl1d1	Ribosomal L1 domain containing 1. (360 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	utp23	UTP23 small subunit processome component. (259 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (747 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (682 aa)
	eif6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (246 aa)
	srfbp1	Uncharacterized protein. (563 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
	nop58	NOP58 ribonucleoprotein homolog (yeast). (553 aa)
	znf622	Zinc finger protein 622. (461 aa)
	utp3	UTP3 small subunit processome component. (478 aa)
	LOC108232336	Ribosomal RNA processing 1. (680 aa)
	tsr1	TSR1 ribosome maturation factor. (833 aa)
	wdr74	WD repeat domain 74. (372 aa)
	utp20	UTP20 small subunit processome component. (2613 aa)
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (480 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (238 aa)
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (504 aa)
	rrp15	Ribosomal RNA processing 15 homolog. (242 aa)
	Rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (339 aa)
	Heatr1	BP28CT domain-containing protein. (356 aa)
	utp25	UTP25 small subunit processor component. (824 aa)
	mrto4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (236 aa)
	fam207a	Family with sequence similarity 207 member A. (250 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	rpf1	Ribosome production factor 1 homolog. (350 aa)
	ebna1bp2	EBNA1 binding protein 2. (305 aa)
	mak16	Protein MAK16 homolog; Belongs to the MAK16 family. (302 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (725 aa)
	kri1	KRI1 homolog. (767 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (383 aa)
	noc4l	Nucleolar complex associated 4 homolog. (525 aa)
	riok2	RIO kinase 2 (yeast). (511 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (260 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (304 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (533 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (868 aa)
	pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (581 aa)
	nol6	Nucleolar protein 6. (1150 aa)
	ltv1	LTV1 ribosome biogenesis factor. (473 aa)
	hunk	Hormonally up-regulated Neu-associated kinase. (657 aa)
	fbl	Fibrillarin. (309 aa)
	utp4	UTP4 small subunit processome component. (688 aa)
	nol10	Nucleolar protein 10. (672 aa)
	wdr46	WD repeat domain 46. (595 aa)
	wdr3	WD repeat domain 3. (931 aa)
	noc2l	NOC2-like nucleolar associated transcriptional repressor. (748 aa)
	ngdn	Neuroguidin, EIF4E binding protein. (325 aa)
	utp11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
	riok1	RIO kinase 1 (yeast). (383 aa)
	nop56	NOP56 ribonucleoprotein homolog. (560 aa)
	tbl3	Transducin (beta)-like 3. (898 aa)
	nop9	PUM-HD domain-containing protein. (614 aa)
	ENSKMAP00000028580	Programmed cell death 11. (901 aa)
	LOC108237496	Zona pellucida glycoprotein d. (398 aa)
	prkdc	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4049 aa)
	UTP14C	UTP14C small subunit processome component. (699 aa)
	LOC108250319	PWP2 small subunit processome component. (909 aa)
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	LOC108231778	Si:ch211-197l9.5. (315 aa)
	bysl	Bystin-like. (439 aa)
	wdr36	WD repeat domain 36. (670 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000028580	Heatr1	ENSKMAP00000028580	ENSKMAP00000011271	Programmed cell death 11.	BP28CT domain-containing protein.	0.999
ENSKMAP00000028580	LOC108232336	ENSKMAP00000028580	ENSKMAP00000007355	Programmed cell death 11.	Ribosomal RNA processing 1.	0.860
ENSKMAP00000028580	LOC108237496	ENSKMAP00000028580	ENSKMAP00000028902	Programmed cell death 11.	Zona pellucida glycoprotein d.	0.979
ENSKMAP00000028580	LOC108250319	ENSKMAP00000028580	ENSKMAP00000004184	Programmed cell death 11.	PWP2 small subunit processome component.	0.999
ENSKMAP00000028580	Rrs1	ENSKMAP00000028580	ENSKMAP00000010974	Programmed cell death 11.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.757
ENSKMAP00000028580	UTP14C	ENSKMAP00000028580	ENSKMAP00000004343	Programmed cell death 11.	UTP14C small subunit processome component.	0.998
ENSKMAP00000028580	bms1	ENSKMAP00000028580	ENSKMAP00000029707	Programmed cell death 11.	BMS1 ribosome biogenesis factor.	0.999
ENSKMAP00000028580	bop1	ENSKMAP00000028580	ENSKMAP00000002282	Programmed cell death 11.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.878
ENSKMAP00000028580	bysl	ENSKMAP00000028580	ENSKMAP00000028918	Programmed cell death 11.	Bystin-like.	0.999
ENSKMAP00000028580	dcaf13	ENSKMAP00000028580	ENSKMAP00000003116	Programmed cell death 11.	Ddb1 and cul4 associated factor 13.	0.996
ENSKMAP00000028580	ebna1bp2	ENSKMAP00000028580	ENSKMAP00000014615	Programmed cell death 11.	EBNA1 binding protein 2.	0.872
ENSKMAP00000028580	emg1	ENSKMAP00000028580	ENSKMAP00000009433	Programmed cell death 11.	EMG1 N1-specific pseudouridine methyltransferase.	0.995
ENSKMAP00000028580	fbl	ENSKMAP00000028580	ENSKMAP00000004880	Programmed cell death 11.	Fibrillarin.	0.979
ENSKMAP00000028580	fcf1	ENSKMAP00000028580	ENSKMAP00000002688	Programmed cell death 11.	FCF1 rRNA-processing protein.	0.996
ENSKMAP00000028580	ftsj3	ENSKMAP00000028580	ENSKMAP00000029731	Programmed cell death 11.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.968
ENSKMAP00000028580	imp3	ENSKMAP00000028580	ENSKMAP00000002555	Programmed cell death 11.	IMP U3 small nucleolar ribonucleoprotein 3.	0.996
ENSKMAP00000028580	imp4	ENSKMAP00000028580	ENSKMAP00000013988	Programmed cell death 11.	IMP U3 small nucleolar ribonucleoprotein 4.	0.993
ENSKMAP00000028580	kri1	ENSKMAP00000028580	ENSKMAP00000016228	Programmed cell death 11.	KRI1 homolog.	0.821
ENSKMAP00000028580	krr1	ENSKMAP00000028580	ENSKMAP00000016428	Programmed cell death 11.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.979
ENSKMAP00000028580	ltv1	ENSKMAP00000028580	ENSKMAP00000006032	Programmed cell death 11.	LTV1 ribosome biogenesis factor.	0.522