37 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	nop58	NOP58 ribonucleoprotein homolog (yeast). (553 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (682 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	fcf1	FCF1 rRNA-processing protein. (198 aa)
	utp23	UTP23 small subunit processome component. (259 aa)
	LOC108231778	Si:ch211-197l9.5. (315 aa)
	Heatr1	BP28CT domain-containing protein. (356 aa)
	LOC108250319	PWP2 small subunit processome component. (909 aa)
	UTP14C	UTP14C small subunit processome component. (699 aa)
	prkdc	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4049 aa)
	nol10	Nucleolar protein 10. (672 aa)
	utp4	UTP4 small subunit processome component. (688 aa)
	fbl	Fibrillarin. (309 aa)
	hunk	Hormonally up-regulated Neu-associated kinase. (657 aa)
	nol6	Nucleolar protein 6. (1150 aa)
	utp3	UTP3 small subunit processome component. (478 aa)
	utp20	UTP20 small subunit processome component. (2613 aa)
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (480 aa)
	utp25	UTP25 small subunit processor component. (824 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (725 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (383 aa)
	noc4l	Nucleolar complex associated 4 homolog. (525 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (533 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (868 aa)
	wdr36	WD repeat domain 36. (670 aa)
	wdr46	WD repeat domain 46. (595 aa)
	wdr3	WD repeat domain 3. (931 aa)
	ngdn	Neuroguidin, EIF4E binding protein. (325 aa)
	utp11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
	nop56	NOP56 ribonucleoprotein homolog. (560 aa)
	tbl3	Transducin (beta)-like 3. (898 aa)
	ENSKMAP00000028580	Programmed cell death 11. (901 aa)
	LOC108237496	Zona pellucida glycoprotein d. (398 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (238 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000028580	Heatr1	ENSKMAP00000028580	ENSKMAP00000011271	Programmed cell death 11.	BP28CT domain-containing protein.	0.999
ENSKMAP00000028580	LOC108237496	ENSKMAP00000028580	ENSKMAP00000028902	Programmed cell death 11.	Zona pellucida glycoprotein d.	0.979
ENSKMAP00000028580	LOC108250319	ENSKMAP00000028580	ENSKMAP00000004184	Programmed cell death 11.	PWP2 small subunit processome component.	0.999
ENSKMAP00000028580	UTP14C	ENSKMAP00000028580	ENSKMAP00000004343	Programmed cell death 11.	UTP14C small subunit processome component.	0.998
ENSKMAP00000028580	dcaf13	ENSKMAP00000028580	ENSKMAP00000003116	Programmed cell death 11.	Ddb1 and cul4 associated factor 13.	0.996
ENSKMAP00000028580	emg1	ENSKMAP00000028580	ENSKMAP00000009433	Programmed cell death 11.	EMG1 N1-specific pseudouridine methyltransferase.	0.995
ENSKMAP00000028580	fbl	ENSKMAP00000028580	ENSKMAP00000004880	Programmed cell death 11.	Fibrillarin.	0.979
ENSKMAP00000028580	fcf1	ENSKMAP00000028580	ENSKMAP00000002688	Programmed cell death 11.	FCF1 rRNA-processing protein.	0.996
ENSKMAP00000028580	imp3	ENSKMAP00000028580	ENSKMAP00000002555	Programmed cell death 11.	IMP U3 small nucleolar ribonucleoprotein 3.	0.996
ENSKMAP00000028580	imp4	ENSKMAP00000028580	ENSKMAP00000013988	Programmed cell death 11.	IMP U3 small nucleolar ribonucleoprotein 4.	0.993
ENSKMAP00000028580	krr1	ENSKMAP00000028580	ENSKMAP00000016428	Programmed cell death 11.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.979
ENSKMAP00000028580	mphosph10	ENSKMAP00000028580	ENSKMAP00000002180	Programmed cell death 11.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.998
ENSKMAP00000028580	ngdn	ENSKMAP00000028580	ENSKMAP00000025254	Programmed cell death 11.	Neuroguidin, EIF4E binding protein.	0.976
ENSKMAP00000028580	noc4l	ENSKMAP00000028580	ENSKMAP00000017146	Programmed cell death 11.	Nucleolar complex associated 4 homolog.	0.999
ENSKMAP00000028580	nol10	ENSKMAP00000028580	ENSKMAP00000004562	Programmed cell death 11.	Nucleolar protein 10.	0.994
ENSKMAP00000028580	nol6	ENSKMAP00000028580	ENSKMAP00000006346	Programmed cell death 11.	Nucleolar protein 6.	0.998
ENSKMAP00000028580	nop14	ENSKMAP00000028580	ENSKMAP00000020420	Programmed cell death 11.	NOP14 nucleolar protein homolog (yeast).	0.999
ENSKMAP00000028580	nop56	ENSKMAP00000028580	ENSKMAP00000026215	Programmed cell death 11.	NOP56 ribonucleoprotein homolog.	0.989
ENSKMAP00000028580	nop58	ENSKMAP00000028580	ENSKMAP00000001039	Programmed cell death 11.	NOP58 ribonucleoprotein homolog (yeast).	0.998
ENSKMAP00000028580	rrp9	ENSKMAP00000028580	ENSKMAP00000009030	Programmed cell death 11.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.996