20 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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co-expression

protein homology

Your Input:
	zfp36l1	Zinc finger protein 36, C3H type-like 1a. (365 aa)
	nudt21	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (231 aa)
	LOC108244662	Sb:cb81. (414 aa)
	ilf3	Interleukin enhancer binding factor 3b. (852 aa)
	ENSKMAP00000015359	Zinc finger protein 36, C3H type-like 2. (307 aa)
	LOC108235005	TIA1 cytotoxic granule-associated RNA binding protein. (386 aa)
	LOC108237959	RNA binding motif protein 24a. (251 aa)
	LOC108251011	ELAV-like protein; Belongs to the RRM elav family. (318 aa)
	exosc8	Exosome component 8. (277 aa)
	LOC108249611	Zgc:162730. (420 aa)
	LOC108251146	Uncharacterized protein. (386 aa)
	cpeb2	Cytoplasmic polyadenylation element binding protein 2. (760 aa)
	zc3h12a	Zinc finger CCCH-type containing 12A. (619 aa)
	LOC108234905	ELAV like RNA binding protein 1a. (364 aa)
	LOC108242029	RNA binding motif protein 24b. (210 aa)
	exosc4	Exosome component 4. (245 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1105 aa)
	cpeb1	Cytoplasmic polyadenylation element binding protein 1b. (567 aa)
	cpsf1	Cleavage and polyadenylation specific factor 1. (1227 aa)
	LOC108228646	Si:dkey-206d17.12. (261 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000015359	exosc4	ENSKMAP00000015359	ENSKMAP00000020679	Zinc finger protein 36, C3H type-like 2.	Exosome component 4.	0.519
ENSKMAP00000015359	exosc8	ENSKMAP00000015359	ENSKMAP00000006935	Zinc finger protein 36, C3H type-like 2.	Exosome component 8.	0.749
LOC108234905	LOC108235005	ENSKMAP00000018899	ENSKMAP00000010917	ELAV like RNA binding protein 1a.	TIA1 cytotoxic granule-associated RNA binding protein.	0.481
LOC108234905	LOC108237959	ENSKMAP00000018899	ENSKMAP00000008398	ELAV like RNA binding protein 1a.	RNA binding motif protein 24a.	0.501
LOC108234905	LOC108242029	ENSKMAP00000018899	ENSKMAP00000019446	ELAV like RNA binding protein 1a.	RNA binding motif protein 24b.	0.541
LOC108234905	LOC108251146	ENSKMAP00000018899	ENSKMAP00000015561	ELAV like RNA binding protein 1a.	Uncharacterized protein.	0.483
LOC108234905	ilf3	ENSKMAP00000018899	ENSKMAP00000014342	ELAV like RNA binding protein 1a.	Interleukin enhancer binding factor 3b.	0.541
LOC108234905	nudt21	ENSKMAP00000018899	ENSKMAP00000011577	ELAV like RNA binding protein 1a.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.519
LOC108235005	LOC108234905	ENSKMAP00000010917	ENSKMAP00000018899	TIA1 cytotoxic granule-associated RNA binding protein.	ELAV like RNA binding protein 1a.	0.481
LOC108235005	LOC108251011	ENSKMAP00000010917	ENSKMAP00000008338	TIA1 cytotoxic granule-associated RNA binding protein.	ELAV-like protein; Belongs to the RRM elav family.	0.457
LOC108235005	cpsf1	ENSKMAP00000010917	ENSKMAP00000002664	TIA1 cytotoxic granule-associated RNA binding protein.	Cleavage and polyadenylation specific factor 1.	0.755
LOC108235005	ilf3	ENSKMAP00000010917	ENSKMAP00000014342	TIA1 cytotoxic granule-associated RNA binding protein.	Interleukin enhancer binding factor 3b.	0.408
LOC108235005	nudt21	ENSKMAP00000010917	ENSKMAP00000011577	TIA1 cytotoxic granule-associated RNA binding protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.545
LOC108237959	LOC108234905	ENSKMAP00000008398	ENSKMAP00000018899	RNA binding motif protein 24a.	ELAV like RNA binding protein 1a.	0.501
LOC108242029	LOC108234905	ENSKMAP00000019446	ENSKMAP00000018899	RNA binding motif protein 24b.	ELAV like RNA binding protein 1a.	0.541
LOC108242029	LOC108251011	ENSKMAP00000019446	ENSKMAP00000008338	RNA binding motif protein 24b.	ELAV-like protein; Belongs to the RRM elav family.	0.590
LOC108244662	exosc4	ENSKMAP00000013157	ENSKMAP00000020679	Sb:cb81.	Exosome component 4.	0.519
LOC108244662	exosc8	ENSKMAP00000013157	ENSKMAP00000006935	Sb:cb81.	Exosome component 8.	0.749
LOC108244662	zfp36l1	ENSKMAP00000013157	ENSKMAP00000017636	Sb:cb81.	Zinc finger protein 36, C3H type-like 1a.	0.910
LOC108249611	exosc4	ENSKMAP00000026001	ENSKMAP00000020679	Zgc:162730.	Exosome component 4.	0.519