(64 nodes) Vesicle docking network (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108232621	t-SNARE coiled-coil homology domain-containing protein. (272 aa)
	stxbp2	Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family. (585 aa)
	rab3c	RAB3C, member RAS oncogene family. (225 aa)
	LOC108241401	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family. (672 aa)
	ENSKMAP00000020044	SynN domain-containing protein. (293 aa)
	LOC108239059	Syntaxin 11a; Belongs to the syntaxin family. (297 aa)
	LOC108228377	Syntaxin 1B; Belongs to the syntaxin family. (286 aa)
	Bves	Blood vessel epicardial substance. (261 aa)
	ENSKMAP00000020431	Uncharacterized protein. (120 aa)
	exoc4	Exocyst complex component 4. (983 aa)
	stx16	Syntaxin 16; Belongs to the syntaxin family. (307 aa)
	UNC13B	Unc-13 homolog B. (1528 aa)
	rabepk	Rab9 effector protein with kelch motifs. (350 aa)
	LOC108244847	Uncharacterized protein. (226 aa)
	UNC13C	Unc-13 homolog C. (1162 aa)
	ENSKMAP00000021859	VPS11 core subunit of CORVET and HOPS complexes. (286 aa)
	rab8b	Multiple EGF-like-domains 8. (207 aa)
	LOC108244319	Uncharacterized protein. (221 aa)
	stx7	Syntaxin 7-like; Belongs to the syntaxin family. (255 aa)
	plek	Pleckstrin. (351 aa)
	vps18	VPS18 core subunit of CORVET and HOPS complexes. (982 aa)
	LOC108247300	Syntaxin 2b; Belongs to the syntaxin family. (294 aa)
	rab12	RAB12, member RAS oncogene family. (239 aa)
	LOC108233357	RAB15, member RAS oncogene family. (213 aa)
	LOC108240947	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (287 aa)
	LOC108232971	RAB8A, member RAS oncogene family. (206 aa)
	rab10	RAB10, member RAS oncogene family. (201 aa)
	rab8a	RAB8A, member RAS oncogene family. (206 aa)
	ENSKMAP00000016874	Uncharacterized protein. (85 aa)
	LOC108247031	Uncharacterized protein. (248 aa)
	stx10	Syntaxin 10. (241 aa)
	stx3	Syntaxin 3A; Belongs to the syntaxin family. (290 aa)
	LOC108229003	YqaJ domain-containing protein. (405 aa)
	STX11	Syntaxin 11; Belongs to the syntaxin family. (304 aa)
	LOC108240099	Syntaxin 11. (297 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (921 aa)
	cep83	Centrosomal protein 83. (708 aa)
	stxbp3	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (592 aa)
	LOC108246927	Si:ch211-208k15.1; Belongs to the syntaxin family. (287 aa)
	rab3d	RAB3D, member RAS oncogene family, b. (221 aa)
	LOC108239455	Uncharacterized protein. (1825 aa)
	LOC108229575	RAB3B, member RAS oncogene family. (217 aa)
	stx6	Syntaxin 6. (232 aa)
	LOC108228859	VPS11 core subunit of CORVET and HOPS complexes. (489 aa)
	SCFD2	Sec1 family domain containing 2. (551 aa)
	rab3a	RAB3A, member RAS oncogene family, b. (219 aa)
	stx17	Syntaxin 17; Belongs to the syntaxin family. (294 aa)
	LOC108244537	Uncharacterized protein. (1164 aa)
	ENSKMAP00000005229	Uncharacterized protein. (3545 aa)
	LOC108248034	Syntaxin 4; Belongs to the syntaxin family. (297 aa)
	ENSKMAP00000004905	Battenin. (141 aa)
	stx5	Syntaxin 5A; Belongs to the syntaxin family. (327 aa)
	LOC108230730	Unc-13 homolog A. (1506 aa)
	LOC108250910	Zmp:0000001301. (428 aa)
	uso1	USO1 vesicle transport factor. (941 aa)
	LOC108245633	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family. (603 aa)
	LOC108229363	Battenin. (216 aa)
	rab13	RAB13, member RAS oncogene family. (200 aa)
	stx8	Syntaxin 8. (238 aa)
	RAB15	RAB15, member RAS oncogene family. (210 aa)
	stx12	Syntaxin 12; Belongs to the syntaxin family. (267 aa)
	ENSKMAP00000001071	Uncharacterized protein. (264 aa)
	STX19	Syntaxin 19. (299 aa)
	ENSKMAP00000000284	Uncharacterized protein. (332 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000000284	LOC108229575	ENSKMAP00000000284	ENSKMAP00000008787	Uncharacterized protein.	RAB3B, member RAS oncogene family.	0.411
ENSKMAP00000000284	LOC108241401	ENSKMAP00000000284	ENSKMAP00000019973	Uncharacterized protein.	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000000284	LOC108244319	ENSKMAP00000000284	ENSKMAP00000025614	Uncharacterized protein.	Uncharacterized protein.	0.411
ENSKMAP00000000284	LOC108244847	ENSKMAP00000000284	ENSKMAP00000021792	Uncharacterized protein.	Uncharacterized protein.	0.411
ENSKMAP00000000284	LOC108245633	ENSKMAP00000000284	ENSKMAP00000003298	Uncharacterized protein.	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000000284	rab3a	ENSKMAP00000000284	ENSKMAP00000006760	Uncharacterized protein.	RAB3A, member RAS oncogene family, b.	0.411
ENSKMAP00000000284	rab3c	ENSKMAP00000000284	ENSKMAP00000019914	Uncharacterized protein.	RAB3C, member RAS oncogene family.	0.411
ENSKMAP00000000284	rab3d	ENSKMAP00000000284	ENSKMAP00000009799	Uncharacterized protein.	RAB3D, member RAS oncogene family, b.	0.411
ENSKMAP00000000284	stxbp2	ENSKMAP00000000284	ENSKMAP00000019513	Uncharacterized protein.	Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000000284	stxbp3	ENSKMAP00000000284	ENSKMAP00000012153	Uncharacterized protein.	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000001071	LOC108229575	ENSKMAP00000001071	ENSKMAP00000008787	Uncharacterized protein.	RAB3B, member RAS oncogene family.	0.411
ENSKMAP00000001071	LOC108241401	ENSKMAP00000001071	ENSKMAP00000019973	Uncharacterized protein.	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000001071	LOC108244319	ENSKMAP00000001071	ENSKMAP00000025614	Uncharacterized protein.	Uncharacterized protein.	0.411
ENSKMAP00000001071	LOC108244847	ENSKMAP00000001071	ENSKMAP00000021792	Uncharacterized protein.	Uncharacterized protein.	0.411
ENSKMAP00000001071	LOC108245633	ENSKMAP00000001071	ENSKMAP00000003298	Uncharacterized protein.	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000001071	rab3a	ENSKMAP00000001071	ENSKMAP00000006760	Uncharacterized protein.	RAB3A, member RAS oncogene family, b.	0.411
ENSKMAP00000001071	rab3c	ENSKMAP00000001071	ENSKMAP00000019914	Uncharacterized protein.	RAB3C, member RAS oncogene family.	0.411
ENSKMAP00000001071	rab3d	ENSKMAP00000001071	ENSKMAP00000009799	Uncharacterized protein.	RAB3D, member RAS oncogene family, b.	0.411
ENSKMAP00000001071	stxbp2	ENSKMAP00000001071	ENSKMAP00000019513	Uncharacterized protein.	Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.	0.477
ENSKMAP00000001071	stxbp3	ENSKMAP00000001071	ENSKMAP00000012153	Uncharacterized protein.	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.	0.477