(14 nodes) Retinoic acid receptor signaling pathway network (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108245157	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (488 aa)
	snw1	SNW domain containing 1. (537 aa)
	ENSKMAP00000005154	NR LBD domain-containing protein. (346 aa)
	pitx2	Homeobox protein. (312 aa)
	LOC108248182	Uncharacterized protein. (515 aa)
	LOC108241994	Retinoid x receptor, beta b. (427 aa)
	rxra	Retinoid X receptor, alpha a. (496 aa)
	LOC108235710	Retinoic acid receptor, gamma b. (504 aa)
	ptf1a	Pancreas associated transcription factor 1a. (259 aa)
	LOC108243261	Uncharacterized protein. (450 aa)
	rarg	Uncharacterized protein. (509 aa)
	RXRB	Retinoid X receptor beta. (469 aa)
	rara	Retinoic acid receptor, alpha a. (455 aa)
	LOC108230807	Uncharacterized protein. (453 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000005154	LOC108230807	ENSKMAP00000005154	ENSKMAP00000001397	NR LBD domain-containing protein.	Uncharacterized protein.	0.593
ENSKMAP00000005154	LOC108241994	ENSKMAP00000005154	ENSKMAP00000022068	NR LBD domain-containing protein.	Retinoid x receptor, beta b.	0.593
ENSKMAP00000005154	RXRB	ENSKMAP00000005154	ENSKMAP00000028761	NR LBD domain-containing protein.	Retinoid X receptor beta.	0.593
ENSKMAP00000005154	rxra	ENSKMAP00000005154	ENSKMAP00000022576	NR LBD domain-containing protein.	Retinoid X receptor, alpha a.	0.593
LOC108230807	ENSKMAP00000005154	ENSKMAP00000001397	ENSKMAP00000005154	Uncharacterized protein.	NR LBD domain-containing protein.	0.593
LOC108230807	LOC108235710	ENSKMAP00000001397	ENSKMAP00000023132	Uncharacterized protein.	Retinoic acid receptor, gamma b.	0.673
LOC108230807	LOC108243261	ENSKMAP00000001397	ENSKMAP00000026688	Uncharacterized protein.	Uncharacterized protein.	0.593
LOC108230807	LOC108248182	ENSKMAP00000001397	ENSKMAP00000014163	Uncharacterized protein.	Uncharacterized protein.	0.593
LOC108230807	RXRB	ENSKMAP00000001397	ENSKMAP00000028761	Uncharacterized protein.	Retinoid X receptor beta.	0.907
LOC108230807	rara	ENSKMAP00000001397	ENSKMAP00000013445	Uncharacterized protein.	Retinoic acid receptor, alpha a.	0.593
LOC108230807	rarg	ENSKMAP00000001397	ENSKMAP00000028395	Uncharacterized protein.	Uncharacterized protein.	0.673
LOC108230807	rxra	ENSKMAP00000001397	ENSKMAP00000022576	Uncharacterized protein.	Retinoid X receptor, alpha a.	0.907
LOC108235710	LOC108230807	ENSKMAP00000023132	ENSKMAP00000001397	Retinoic acid receptor, gamma b.	Uncharacterized protein.	0.673
LOC108235710	LOC108241994	ENSKMAP00000023132	ENSKMAP00000022068	Retinoic acid receptor, gamma b.	Retinoid x receptor, beta b.	0.593
LOC108235710	RXRB	ENSKMAP00000023132	ENSKMAP00000028761	Retinoic acid receptor, gamma b.	Retinoid X receptor beta.	0.593
LOC108235710	rxra	ENSKMAP00000023132	ENSKMAP00000022576	Retinoic acid receptor, gamma b.	Retinoid X receptor, alpha a.	0.593
LOC108241994	ENSKMAP00000005154	ENSKMAP00000022068	ENSKMAP00000005154	Retinoid x receptor, beta b.	NR LBD domain-containing protein.	0.593
LOC108241994	LOC108235710	ENSKMAP00000022068	ENSKMAP00000023132	Retinoid x receptor, beta b.	Retinoic acid receptor, gamma b.	0.593
LOC108241994	LOC108243261	ENSKMAP00000022068	ENSKMAP00000026688	Retinoid x receptor, beta b.	Uncharacterized protein.	0.593
LOC108241994	LOC108248182	ENSKMAP00000022068	ENSKMAP00000014163	Retinoid x receptor, beta b.	Uncharacterized protein.	0.593