(13 nodes) Formation of anatomical boundary network (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108249020	Eph receptor A4, like. (1184 aa)
	med12	Mediator complex subunit 12. (2088 aa)
	MAFB	MAF bZIP transcription factor B. (409 aa)
	SMAD4	Mothers against decapentaplegic homolog. (457 aa)
	ENSKMAP00000018778	Fibronectin type-III domain-containing protein. (376 aa)
	efnb2	Ephrin-B2a; Belongs to the ephrin family. (334 aa)
	selenoh	Uncharacterized protein. (109 aa)
	LOC108228999	Mothers against decapentaplegic homolog. (553 aa)
	LOC108247541	Mothers against decapentaplegic homolog. (503 aa)
	LOC108239520	Uncharacterized protein. (1089 aa)
	egr2	Early growth response 2b. (443 aa)
	LOC108245159	Beta-1,3-N-acetylglucosaminyltransferase. (389 aa)
	mib1	Mindbomb E3 ubiquitin protein ligase 1. (1037 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000018778	efnb2	ENSKMAP00000018778	ENSKMAP00000017972	Fibronectin type-III domain-containing protein.	Ephrin-B2a; Belongs to the ephrin family.	0.584
LOC108239520	efnb2	ENSKMAP00000010214	ENSKMAP00000017972	Uncharacterized protein.	Ephrin-B2a; Belongs to the ephrin family.	0.584
LOC108249020	efnb2	ENSKMAP00000027592	ENSKMAP00000017972	Eph receptor A4, like.	Ephrin-B2a; Belongs to the ephrin family.	0.584
MAFB	egr2	ENSKMAP00000024361	ENSKMAP00000008921	MAF bZIP transcription factor B.	Early growth response 2b.	0.411
efnb2	ENSKMAP00000018778	ENSKMAP00000017972	ENSKMAP00000018778	Ephrin-B2a; Belongs to the ephrin family.	Fibronectin type-III domain-containing protein.	0.584
efnb2	LOC108239520	ENSKMAP00000017972	ENSKMAP00000010214	Ephrin-B2a; Belongs to the ephrin family.	Uncharacterized protein.	0.584
efnb2	LOC108249020	ENSKMAP00000017972	ENSKMAP00000027592	Ephrin-B2a; Belongs to the ephrin family.	Eph receptor A4, like.	0.584
egr2	MAFB	ENSKMAP00000008921	ENSKMAP00000024361	Early growth response 2b.	MAF bZIP transcription factor B.	0.411