(14 nodes) Posterior lateral line development network (Kryptolebias marmoratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmem132e	Transmembrane protein 132E. (1088 aa)
	llgl2	LLGL scribble cell polarity complex component 2. (1009 aa)
	shtn1	Shootin 1. (496 aa)
	fgfr1	Fibroblast growth factor receptor. (831 aa)
	LOC108232213	R-spondin 3. (325 aa)
	neurod1	Neurogenic differentiation factor. (355 aa)
	yap1	Yes-associated protein 1. (438 aa)
	gnb1	Guanine nucleotide binding protein (G protein), beta polypeptide 1a. (340 aa)
	mib1	Mindbomb E3 ubiquitin protein ligase 1. (1037 aa)
	abhd12	Abhydrolase domain containing 12. (372 aa)
	znrf3	Zinc and ring finger 3. (896 aa)
	LOC108250437	Mothers against decapentaplegic homolog. (472 aa)
	fgf3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (242 aa)
	LOC108231344	Guanine nucleotide binding protein (G protein), beta polypeptide 1b. (340 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108231344	gnb1	ENSKMAP00000007850	ENSKMAP00000004813	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.900
LOC108232213	znrf3	ENSKMAP00000028554	ENSKMAP00000002660	R-spondin 3.	Zinc and ring finger 3.	0.981
LOC108250437	yap1	ENSKMAP00000008406	ENSKMAP00000005198	Mothers against decapentaplegic homolog.	Yes-associated protein 1.	0.676
fgf3	fgfr1	ENSKMAP00000017192	ENSKMAP00000026564	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.852
fgfr1	fgf3	ENSKMAP00000026564	ENSKMAP00000017192	Fibroblast growth factor receptor.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.852
gnb1	LOC108231344	ENSKMAP00000004813	ENSKMAP00000007850	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.900
yap1	LOC108250437	ENSKMAP00000005198	ENSKMAP00000008406	Yes-associated protein 1.	Mothers against decapentaplegic homolog.	0.676
znrf3	LOC108232213	ENSKMAP00000002660	ENSKMAP00000028554	Zinc and ring finger 3.	R-spondin 3.	0.981