17 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ep300	E1A binding protein p300 b. (2785 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (481 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (837 aa)
	rnf6	Ring finger protein (C3H2C3 type) 6. (719 aa)
	tmf1	TATA element modulatory factor 1. (1153 aa)
	LOC108230652	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (666 aa)
	LOC108250440	E1A binding protein p300 a. (2399 aa)
	daxx	Death-domain associated protein. (756 aa)
	LOC108239241	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (681 aa)
	snw1	SNW domain containing 1. (537 aa)
	LOC108236496	AT rich interactive domain 5A (MRF1-like). (530 aa)
	LOC108240580	Nuclear receptor binding SET domain protein 1a. (2112 aa)
	LOC108235495	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (704 aa)
	LOC108238064	Nuclear receptor binding SET domain protein 1b. (2524 aa)
	PRKCB	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (680 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	PRKCA	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (670 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108230652	PRKCB	ENSKMAP00000009546	ENSKMAP00000024100	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.900
LOC108238064	LOC108250440	ENSKMAP00000025272	ENSKMAP00000008734	Nuclear receptor binding SET domain protein 1b.	E1A binding protein p300 a.	0.403
LOC108238064	ep300	ENSKMAP00000025272	ENSKMAP00000020640	Nuclear receptor binding SET domain protein 1b.	E1A binding protein p300 b.	0.403
LOC108239241	PRKCA	ENSKMAP00000025930	ENSKMAP00000023137	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.900
LOC108240580	LOC108250440	ENSKMAP00000007554	ENSKMAP00000008734	Nuclear receptor binding SET domain protein 1a.	E1A binding protein p300 a.	0.403
LOC108240580	ep300	ENSKMAP00000007554	ENSKMAP00000020640	Nuclear receptor binding SET domain protein 1a.	E1A binding protein p300 b.	0.403
LOC108250440	LOC108238064	ENSKMAP00000008734	ENSKMAP00000025272	E1A binding protein p300 a.	Nuclear receptor binding SET domain protein 1b.	0.403
LOC108250440	LOC108240580	ENSKMAP00000008734	ENSKMAP00000007554	E1A binding protein p300 a.	Nuclear receptor binding SET domain protein 1a.	0.403
LOC108250440	kdm1a	ENSKMAP00000008734	ENSKMAP00000013386	E1A binding protein p300 a.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.658
LOC108250440	snw1	ENSKMAP00000008734	ENSKMAP00000004331	E1A binding protein p300 a.	SNW domain containing 1.	0.668
PRKCA	LOC108239241	ENSKMAP00000023137	ENSKMAP00000025930	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.900
PRKCB	LOC108230652	ENSKMAP00000024100	ENSKMAP00000009546	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.900
ep300	LOC108238064	ENSKMAP00000020640	ENSKMAP00000025272	E1A binding protein p300 b.	Nuclear receptor binding SET domain protein 1b.	0.403
ep300	LOC108240580	ENSKMAP00000020640	ENSKMAP00000007554	E1A binding protein p300 b.	Nuclear receptor binding SET domain protein 1a.	0.403
ep300	kdm1a	ENSKMAP00000020640	ENSKMAP00000013386	E1A binding protein p300 b.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.658
ep300	snw1	ENSKMAP00000020640	ENSKMAP00000004331	E1A binding protein p300 b.	SNW domain containing 1.	0.668
kdm1a	LOC108250440	ENSKMAP00000013386	ENSKMAP00000008734	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	E1A binding protein p300 a.	0.658
kdm1a	ep300	ENSKMAP00000013386	ENSKMAP00000020640	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	E1A binding protein p300 b.	0.658
prpf6	snw1	ENSKMAP00000024031	ENSKMAP00000004331	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	SNW domain containing 1.	0.515
snw1	LOC108250440	ENSKMAP00000004331	ENSKMAP00000008734	SNW domain containing 1.	E1A binding protein p300 a.	0.668