23 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	abl2	Tyrosine-protein kinase. (1203 aa)
	pou4f1	POU domain protein. (384 aa)
	LOC108250191	Uncharacterized protein. (662 aa)
	LOC108229974	Hexosaminidase A (alpha polypeptide). (337 aa)
	gm2a	GM2 ganglioside activator. (196 aa)
	abl1	Tyrosine-protein kinase. (1121 aa)
	LOC108233467	Otoferlin a. (1965 aa)
	ENSKMAP00000019691	Protein tyrosine phosphatase receptor type Q. (2160 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (289 aa)
	LOC108239095	Otoferlin b. (1636 aa)
	hexb	Beta-hexosaminidase. (546 aa)
	shank3	SH3 and multiple ankyrin repeat domains 3a. (1987 aa)
	LOC108237215	Uncharacterized protein. (1771 aa)
	shank1	SH3 and multiple ankyrin repeat domains 1. (2430 aa)
	fer1l6	Fer-1 like family member 6. (1883 aa)
	lrrc45	Leucine rich repeat containing 45. (675 aa)
	LOC108239927	Solute carrier family 17 member 8. (586 aa)
	pou4f2	POU domain protein. (386 aa)
	igdcc3	Immunoglobulin superfamily, DCC subclass, member 3. (763 aa)
	LOC108244456	Si:ch211-57n23.4. (701 aa)
	ush1c	Usher syndrome 1C. (557 aa)
	LOC108238843	Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino. (245 aa)
	LOC108250477	Uncharacterized protein. (1558 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108229974	gm2a	ENSKMAP00000025756	ENSKMAP00000024090	Hexosaminidase A (alpha polypeptide).	GM2 ganglioside activator.	0.722
LOC108229974	hexb	ENSKMAP00000025756	ENSKMAP00000017931	Hexosaminidase A (alpha polypeptide).	Beta-hexosaminidase.	0.901
abl1	abl2	ENSKMAP00000023528	ENSKMAP00000030125	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.913
abl2	abl1	ENSKMAP00000030125	ENSKMAP00000023528	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.913
cln8	gm2a	ENSKMAP00000019261	ENSKMAP00000024090	CLN8 transmembrane ER and ERGIC protein.	GM2 ganglioside activator.	0.461
gm2a	LOC108229974	ENSKMAP00000024090	ENSKMAP00000025756	GM2 ganglioside activator.	Hexosaminidase A (alpha polypeptide).	0.722
gm2a	cln8	ENSKMAP00000024090	ENSKMAP00000019261	GM2 ganglioside activator.	CLN8 transmembrane ER and ERGIC protein.	0.461
gm2a	hexb	ENSKMAP00000024090	ENSKMAP00000017931	GM2 ganglioside activator.	Beta-hexosaminidase.	0.722
hexb	LOC108229974	ENSKMAP00000017931	ENSKMAP00000025756	Beta-hexosaminidase.	Hexosaminidase A (alpha polypeptide).	0.901
hexb	gm2a	ENSKMAP00000017931	ENSKMAP00000024090	Beta-hexosaminidase.	GM2 ganglioside activator.	0.722